| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1113435 = | NA (NA) | 11 (0.030) | 7/258 | NT | NA | noncoding (19/98 nt) | RIP97 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP97 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 2684124 = | NA (NA) | noncoding (8/98 nt) | RIP186 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP186 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
AATTAAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1113590‑1113435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTAC > NC_000913/2684124‑2684145 AATTAAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGG > 1:1609861/1‑150AATTAAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGG > 1:3431444/1‑150AATTAAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGG > 2:5718068/1‑150AATTAAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGG > 1:6768023/1‑150 TTAAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCC < 2:3171995/150‑1 TAAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCT < 1:2062847/150‑1 AAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTG < 2:845754/150‑1 AAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTG > 2:68653/1‑150 AAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTG < 2:4818058/150‑1 AACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGA > 1:544561/1‑150 AACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGA < 2:3403214/150‑1 AACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGA > 1:2502634/1‑150 ACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGAT > 2:1631577/1‑150 ACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGAT < 1:4798966/150‑1 TCTTTCGTAAAAAAATACCGGCAGAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGATGCGCTACGCTTATC < 2:6144395/150‑1 CTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGATGCGCTACGCTTATCA < 1:950416/150‑1 CTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGATGCGCTACGCTTATCA < 1:4356844/150‑1 TTCGTAAAAAAAGACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGATGCGCTACGCTTATCAGG < 2:5788701/150‑1 TCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGATGCGCTACGCTTATCAGGC < 2:5621931/150‑1 TCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGATGCGCTACGCTTATCAGGC < 1:3762424/150‑1 TCGTAAAAAAATACCGGCATAACGCCGGTA‑TTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGATGCGCTACGCTTATCAGGCC < 2:2556824/150‑1 CGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGATGCGCTACGCTTATCAGGCC < 2:1599441/150‑1 AAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGATGCGCTACGCTTATCAGGCCTAC < 2:5453325/150‑1 CTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGATGCGCTACGCTTATCAGGC < 1:6622044/78‑1 CTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGATGCGCTACGCTTATCAGGC > 2:6622044/1‑78 AATTAAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACGATGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1113590‑1113435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTAC > NC_000913/2684124‑2684145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |