New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3392102458 (1.170)19 (0.060) 19/206 NT 5.3% noncoding (27/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences
?NC_000913 3392377 = 335 (1.140)noncoding (302/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences

Only 100 of 659 total aligned reads displayed.

CGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC  >  NC_000913/3391953‑3392251
                                                                                                                                                     |                                                                                                                                                     
 gAGGATCGCGAACAAGTCCTGATGTTTCATGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCa                                                                                                                                                      <  1:887994/150‑1 (MQ=255)
 gAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCa                                                                                                                                                      <  1:1877563/150‑1 (MQ=255)
  aGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAg                                                                                                                                                     >  1:4186471/1‑150 (MQ=255)
    gATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGcc                                                                                                                                                   <  1:2008886/150‑1 (MQ=255)
    gATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGcc                                                                                                                                                   <  2:1348732/150‑1 (MQ=255)
      tCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTa                                                                                                                                                 >  1:5066461/1‑150 (MQ=255)
         cgAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACgg                                                                                                                                              <  2:6522139/150‑1 (MQ=255)
         cgAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACgg                                                                                                                                              >  1:2492125/1‑150 (MQ=255)
          gAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGt                                                                                                                                             >  2:156299/1‑150 (MQ=255)
                   cTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCg                                                                                                                                    <  1:5014692/150‑1 (MQ=255)
                   cTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCg                                                                                                                                    <  2:178378/150‑1 (MQ=255)
                       tGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGttt                                                                                                                                <  2:6204125/150‑1 (MQ=255)
                             aGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGc                                                                                                                          <  1:6468685/150‑1 (MQ=255)
                             aGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGc                                                                                                                          <  1:829159/150‑1 (MQ=255)
                               gCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCt                                                                                                                        <  1:3452647/150‑1 (MQ=255)
                                  gTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGAt                                                                                                                     <  1:4514117/150‑1 (MQ=255)
                                    tCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGAtta                                                                                                                   <  2:297397/150‑3 (MQ=255)
                                    tCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATaa                                                                                                                   <  1:4737150/150‑1 (MQ=255)
                                        cgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGc                                                                                                                                                    <  2:4162595/113‑1 (MQ=255)
                                              cAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGc                                                                                                         >  1:3710628/1‑150 (MQ=255)
                                               aaTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCg                                                                                                        >  1:2402208/1‑150 (MQ=255)
                                               aaTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAG‑TACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttgg                                                                                                                           >  2:3351488‑M1/1‑102 (MQ=255)
                                                aTTGTTCACTTACCAGGTTATGACTCAGCGTTTTTGCTACTCGTTAGTTTCTGCTGGAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcct                                                                                                       <  2:4257833‑M1/150‑49 (MQ=255)
                                                aTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctgg                                                                                                                                   >  2:2352816‑M1/1‑102 (MQ=255)
                                                aTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGt                                                                                                       >  1:432871/1‑150 (MQ=255)
                                                 ttGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTc                                                                                                      <  2:437697/150‑1 (MQ=255)
                                                   gTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGc                                                                                                    <  2:2438985/150‑1 (MQ=255)
                                                    ttCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa                                                                                                   >  1:692268/1‑150 (MQ=255)
                                                       aCTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa                                                                                                <  1:4093008/150‑1 (MQ=255)
                                                         ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg                                                                                              >  2:2676165/1‑150 (MQ=255)
                                                           aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGTGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATATGACGCACAGCGTCTCATCAGGCa                                                                                            <  1:4015104/150‑1 (MQ=255)
                                                           aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCa                                                                                            >  1:4883612/1‑150 (MQ=255)
                                                           aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCa                                                                                            >  1:2728811/1‑150 (MQ=255)
                                                            ccAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATGCGACGCTGTGCGTCTTATCAGGcct                                                                                           <  1:1254012/150‑3 (MQ=38)
                                                            ccAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg                                                                                              <  2:6697718/147‑1 (MQ=255)
                                                             cAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCCGATAAGACGCACAGCGTCGCATCAGGCAAc                                                                                          >  2:4754091/1‑150 (MQ=255)
                                                                 ttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGTACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCt                                                                                      >  1:6582068/1‑150 (MQ=255)
                                                                 ttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGtt                                                                                                                                 <  2:6338477/107‑1 (MQ=255)
                                                                    aGACTGATCGTTTTTGCTTCTCGTTAGTTAGTGCAGTAGAGGATTTTTGACGGCTGCCGGTTGCGGCGTGCACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGCCGCACAGCGTCGCATCAGGCAACGGCTGTc                                                                                   <  2:5509274/150‑1 (MQ=25)
                                                                       atcATCGTTTTTTCTACTCGTTAGTTACTGAAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgc                                                                                <  2:2193700‑M1/149‑72 (MQ=255)
                                                                         cagggTTTGTGCTACTCGTTCGTTACTGCCGTAGCGGATTTTTTACGGCTGCCGGAGGCGGCGTGAACGCCCTCTCCCGCCTACGGTTCTGTTCCGGTTTGTAGGCCTGATAAGACGCCCAGCGTCGCATCAGGCAACGGCTGTCGGATg                                                                              <  2:750471/146‑1 (MQ=21)
                                                                           tCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATgcg                                                                            >  1:3852166/1‑150 (MQ=255)
                                                                           tCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCATGATAAGACGCACAGCGTCGCAACAGGCAACGCCTGTCGGATgcg                                                                            >  1:5510412/1‑150 (MQ=255)
                                                                             gTTTTTGCTAGTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGTCGCACAGCGTCGCATCAGGCAACGGCTGTCGGATgcggc                                                                          >  2:2069840/1‑150 (MQ=255)
                                                                                  tGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTaaa                                                                     <  2:5066461/150‑1 (MQ=255)
                                                                                   gCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAAc                                                                    >  1:461183/1‑150 (MQ=255)
                                                                                        tCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATaa                                                                                                                   >  1:5923916/1‑98 (MQ=255)
                                                                                        tCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACTCCtt                                                               >  1:2567630/1‑150 (MQ=255)
                                                                                         cGTTAGTTACTGCAGTAGAGGATTTTTTCCGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTa                                                              <  2:112040/150‑1 (MQ=255)
                                                                                            tagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATcc                                                           <  2:874279/150‑1 (MQ=255)
                                                                                            tagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATAAGGCGTTTACGCCGCATcc                                                           <  2:4911291/150‑1 (MQ=21)
                                                                                                       gTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGGAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACgggt                                                >  1:6146015/1‑148 (MQ=255)
                                                                                                             gATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGCACCGGCTGTCGGATGCGGCGTAAACGCCTGATCCGACCGACGGTGATGTTc                                          >  2:6058373/1‑150 (MQ=17)
                                                                                                             gATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTc                                          >  1:1780361/1‑150 (MQ=255)
                                                                                                             gATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGGGATGTTc                                          >  1:5205533/1‑150 (MQ=255)
                                                                                                                tttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg                                                                                              <  1:1147872/95‑1 (MQ=255)
                                                                                                                  tttACGGCTGCCGTAGGCGGCGTGAACGCCCTATCCAGCCTACGGTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt                                     <  1:3998525/150‑1 (MQ=255)
                                                                                                                       ggCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacactt                                >  2:2897903‑M1/1‑31 (MQ=255)
                                                                                                                        gCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttc                               <  2:461183‑M1/150‑121 (MQ=255)
                                                                                                                        gCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttc                               <  1:6181459‑M1/150‑121 (MQ=255)
                                                                                                                        gCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTTGGCCTGATAAGACGCACAGCGTCGCATCAGGCACCGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTGTGTCGGc                               >  2:5752545/1‑150 (MQ=14)
                                                                                                                        gCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGc                               >  1:1000447/1‑150 (MQ=255)
                                                                                                                        gCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGc                               <  2:1466561/150‑1 (MQ=255)
                                                                                                                        gCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGc                               <  2:5953652/150‑1 (MQ=255)
                                                                                                                        gCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGGGTGTAGGc                               >  2:3696698/1‑150 (MQ=255)
                                                                                                                         cTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcg                              >  1:6657335‑M1/1‑29 (MQ=255)
                                                                                                                          tGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgt                             <  1:5609275‑M1/150‑123 (MQ=255)
                                                                                                                          tGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCt                             <  2:566129/150‑1 (MQ=255)
                                                                                                                           gCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgtt                            <  1:929347‑M1/150‑124 (MQ=255)
                                                                                                                            tcgGATAGGGCGTTCACGCCGCATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcg                              >  2:2526335‑M1/2‑26 (MQ=255)
                                                                                                                            ccGGTTGCGGCTTGAACGCCCTACCCAGCCTACGTTTATGTTCCGGTTTGTCGGCCTTATAAGCCGCACAGCGTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGa                           <  1:156304/150‑1 (MQ=14)
                                                                                                                              ggatagggcgttcacgCCGCATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttct                                                      <  1:5715936‑M1/115‑98 (MQ=255)
                                                                                                                               gATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGGTTGTAGGCCTGATAAGACGCACAGCGTCGCCTCAGGCAACGGCTGTCGGATGCGGCGTAACCGCCTTAGCCGACCTACGGGGCTGTTCCGGGGGGAGGCCTGagac                        >  2:1909156/1‑147 (MQ=14)
                                                                                                                                 tGCGGCTTGAACGCCCTATCCAGCCTACGTTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCTTCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa                      <  1:2659596/150‑1 (MQ=255)
                                                                                                                                   cggcgTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcg                                                                           <  2:1668810‑M1/95‑77 (MQ=255)
                                                                                                                                   cggcgTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcg                                                                           <  2:5266746‑M1/95‑77 (MQ=255)
                                                                                                                                    ggcgTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcgg                   >  2:4430663‑M1/1‑18 (MQ=255)
                                                                                                                                    ggcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGc                               <  2:2738340/138‑1 (MQ=255)
                                                                                                                                     gcgTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcgga                  >  1:3379034‑M1/1‑17 (MQ=255)
                                                                                                                                     gcgTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcgga                  >  1:1661818‑M1/1‑17 (MQ=255)
                                                                                                                                     gcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTTGGCCTGATAAGACGca                  >  1:2829910/1‑150 (MQ=255)
                                                                                                                                     gcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGATGCGGCGTCAACGCCTTATCCGACCTACGGTTATGTTCGGGGTGTAGGCCAGTTGAGACCca                  >  1:360601/1‑150 (MQ=14)
                                                                                                                                       gTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatc                <  1:6341081‑M1/150‑136 (MQ=255)
                                                                                                                                            cGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtcca           <  1:4395612‑M1/150‑141 (MQ=255)
                                                                                                                                            cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc           <  2:5812280/150‑1 (MQ=255)
                                                                                                                                            cGCCCTAACCAGCCCACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc           <  2:4080893/150‑1 (MQ=255)
                                                                                                                                             gCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccag          >  1:217326‑M1/1‑9 (MQ=255)
                                                                                                                                             gCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCg          >  1:6009308/1‑150 (MQ=255)
                                                                                                                                             gCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGTTTGTAGGCATGATAAGACTCACAGCGTCg          >  1:6084011/1‑150 (MQ=255)
                                                                                                                                              cccTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagc         <  1:2944‑M1/150‑143 (MQ=255)
                                                                                                                                               ccTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagcg        >  2:4658526‑M1/1‑7 (MQ=255)
                                                                                                                                               ccTATCCAGCCTACGGTTATGTTCCGGTTTGTCGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa        <  1:1527413/150‑1 (MQ=255)
                                                                                                                                                cTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagcgg       >  2:3494233‑M1/1‑6 (MQ=255)
                                                                                                                                                cTATCCAGCCTACGTTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACCGCGTCGCATCTGTCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt       <  1:3221076/150‑1 (MQ=14)
                                                                                                                                                cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTATGCCTGATAAGAAGCACAGCGTCGCAt       >  2:4552322/1‑150 (MQ=255)
                                                                                                                                                 tATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagcgga      <  1:5353016‑M1/150‑146 (MQ=255)
                                                                                                                                                  aTCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa     <  2:3874330/150‑1 (MQ=255)
                                                                                                                                                   tCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagcggacc    >  2:6613196‑M1/1‑3 (MQ=255)
                                                                                                                                                    ccAGCCTAGGTTTATGTTCCGGTTTGTAGGCCTTATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg   <  1:2261440/150‑1 (MQ=255)
                                                                                                                                                     cAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTATGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc  >  2:3225315/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC  >  NC_000913/3391953‑3392251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.