| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3330533 = | 165 (1.160) | 3 (0.020) | 3/264 | NT | 1.9% | noncoding (74/98 nt) | RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3330558 = | 149 (1.100) | intergenic (+162/+24) | dacB/obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCATCGCCAGCAGCTTGAAGAGATTGCTGAAGAGGATGATGAAGACTGGGATGACGACTGGGACGAAGACGACGAAGAAGGCGTTGAGTTCATTTACAAGCGTTAATCACTGATGATAAACGCCAAATCAGCCTGATGCGCTACGCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3330687‑3330533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAA > NC_000913/3330558‑3330704 TCATCGCCAGCAGCTTGAAGAGATTGCTGAAGAGGATGATGAAGACTGGGATGACGACTGGGACGAAGACGACGAAGAAGGCGTTGAGTTCATTTACAAGCGTTAATCACTGATGATAAACGCCAAATCAGCCTGATGCGCTACGCTTAT < 2:195335/150‑1 TCGCCAGCAGCTTGAAGAGATTGCTGAAGAGGATGATGAAGACTGGGATGACGACTGGGACGAAGACGACGAAGAAGGCGTTGAGTTCATTTACAAGCGTTAATCACTGATGATAAACGCCAAATCAGCCTGATGCGCTACGCTTATCAG > 2:808882/1‑150 TCGCCAGCAGCTTGAAGAGATTGCTGAAGAGGATGATGAAGACTGGGATGACGACTGGGACGAAGACGACGAAGAAGGCGTTGAGTTCATTTACAAGCGTTAATCACTGATGATAAACGCCAAATCAGCCTGATGCGCTACGCTTATCAG < 1:1476001/150‑1 TCGCCAGCAGCTTGAAGAGATTGCTGAAGAGGATGATGAAGACTGGGATGACGACTGGGACGAAGACGACGAAGAAGGCGTTGAGTTCATTTACAAGCGTTAATCACTGATGATAAACGCCAAATCAGCCTGATGCGCTACGCTTATCAG < 1:1520223/150‑1 TCGCCAGCAGCTTGAAGAGATTGCTGAAGAGGATGATGAAGACTGGGATGACGACTGGGACGAAGACGACGAAGAAGGCGTTGAGTTCATTTACAAGCGTTAATCACTGATGATAAACGCCAAATCAGCCTGATGCGCTACGCTTATCAG < 1:583280/150‑1 TCGCCAGCAGCTTGAAGAGATTGCTGAAGAGGATGATGAAGACTGGGATGACGACTGGGACGAAGACGACGAAGAAGGCGTTGAGTTCATTTACAAGCGTTAATCACTGATGATAAACGCCAAATCAGCCTGATGCGCTACGCTTATCAG < 1:606347/150‑1 TCGCCAGCAGCTTGAAGAGATTGCTGAAGAGGATGATGAAGACTGGGATGACGACTGGGACGAAGACGACGAAGAAGGCGTTGAGTTCATTTACAAGCGTTAATCACTGATGATAAACGCCAAATCAGCCTGATGCGCTACGCTTATCAG < 1:606424/150‑1 TCGCCAGCAGCTTGAAGAGATTGCTGAAGAGGATGATGAAGACTGGGATGACGACTGGGACGAAGACGACGAAGAAGGCGTTGAGTTCATTTACAAGCGTTAATCACTGATGATAAACGCCAAATCAGCCTGATGCGCTACGCTTATCAG < 2:1229594/150‑1 GCCAGCAGCTTGAAGAGATTGCTGAAGAGGATGATGAAGACTGGGATGACGACTGGGACGAAGACGACGAAGAAGGCGTTGAGTTCATTTACAAGCGTTAATCACTGATGATAAACGCCAAATCAGCCTGATGCGCTACGCTTATCAGGC < 2:1202420/150‑1 TAAACGCCAAATCAGCCTGATGCGCTACGCTTATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTC < 1:1093565/84‑1 TAAACGCCAAATCAGCCTGATGCGCTACGCTTATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTC > 2:1093565/1‑84 GCCTGATGCGCTACGCTTATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGC > 2:1535089/1‑150 ATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACA > 1:2077262/1‑150 ATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACA > 1:213949/1‑150 TCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCACCGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACAT < 1:917983/150‑1 TCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACAT < 1:917978/150‑1 AGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGA < 1:948818/150‑1 AGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGA < 1:1151582/150‑1 GGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAA < 2:2324547/150‑1 GGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAA < 2:2324677/150‑1 TCATCGCCAGCAGCTTGAAGAGATTGCTGAAGAGGATGATGAAGACTGGGATGACGACTGGGACGAAGACGACGAAGAAGGCGTTGAGTTCATTTACAAGCGTTAATCACTGATGATAAACGCCAAATCAGCCTGATGCGCTACGCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3330687‑3330533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAA > NC_000913/3330558‑3330704 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |