New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4231272 =	81 (0.820)	5 (0.050)	5/264	NT	5.4%	intergenic (+46/+87)	rluF/yjbD	23S rRNA pseudouridine(2604) synthase/DUF3811 family protein
	?	NC_000913	4231311 =	97 (1.030)					intergenic (+85/+48)	rluF/yjbD	23S rRNA pseudouridine(2604) synthase/DUF3811 family protein

GCTTATAAACCGGATCCTGAAGCGTCATTTAGCTGGTCAGCAAATACGTCGACGCGCGGCAGGCGCTAATCCACAATCAACGCCTGAGATTTTCACTCGTCAGTGTGAACACAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGC‑‑‑‑‑‑GAGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4231427‑4231272 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggggaAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTATTTGCTGACCAGCTAAATGACGCTTCAGGATCCGGTTTATAAGCCTGCTTTTTCTTCAACTGGCGGGCTTTTTTCG  >  NC_000913/4231311‑4231459                                                                                                                                                                                                                                                                                                                         GCTTATAAACCGGATCCTGAAGCGTCATTTAGCTGGTCAGCAAATACGTCGACGCGCGGCAGGCGCTAATCCACAATCAACGCCTGAGATTTTCACTCGTCAGTGTGAACACAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGC‑‑‑‑‑‑G                                                                                                                                                             <  1:71970/150‑1  CTTATAAACCGGATCCTGAAGCGTCATTTAGCTGGTCAGCAAATACGTCGACGCGCGGCAGGCGCTAATCCACAATCAACGCCTGAGATTTTCACTCGTCAGTGTGAACACAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGC‑‑‑‑‑‑GA                                                                                                                                                            >  1:1168448/1‑150      TAAACCGGAGCCTGAAGCGTCATTTAGCTGGGCAGCAAATACGTCGACGCGCGGCAGGCGCTAATCCACAATCAACGCCTGAGATTTTCACTCGTCAGTGTGAACACAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGC‑‑‑‑‑‑GAGGGG                                                                                                                                                        <  1:1190493/150‑1                                                                                              CACTCGTCAGTGTGAACACAATTTTCCCCTCACCCTTACCCGTTTCCCGAAGGGGCGAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTATTTGCTGA                                                                      >  1:1078564/1‑150                                                                                                              CACAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGC‑‑‑‑‑‑GAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTATTTGCTGACCAGCTAAATGACGCTTCAGGA                                                >  1:1199378/1‑150                                                                                                                CAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGC‑‑‑‑‑‑GAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTATTTGCTGACCAGCTAAATGACGCTTCAGGATC                                              >  1:671504/1‑150                                                                                                                  ATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGC‑‑‑‑‑‑GAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTATTTGCTGACCAGCTAAATGACGCTTCAGGATCCG                                            >  1:1399530/1‑150                                                                                                                                       TTTTCCCGAAGGGGC‑‑‑‑‑‑GAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTATTTGCTGACCAGCTAAATGACGCTTCAGGATCCGGTTTATAAGCCTGCTTTTTCT                       <  2:671504/150‑1                                                                                                                                                               GGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTATTTGCTGACCAGCTAAATGACGCTTCAGGATCCGGTTTATAAGCCTGCTTTTTCTTCAACTGGCGGGCTTTTT     <  2:1078564/150‑1                                                                                                                                                                 GAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTATTTGCTGACCAGCTAAATGACGCTTCAGGATCCGGTTTATAAGCCTGCTTTTTCTTCAACTGGCGGGCTTTTTTC   <  2:1347516/150‑1                                                                                                                                                                 GAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTATTTGCTGACCAGCTAAATGACGCTTCAGGATCCGGTTTATAAGCCTGCTTTTTCTTCAACTGGCGGGCTTTTTTC   <  2:232727/150‑1                                                                                                                                                                  AAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGGGTTGAGTGTGGATTAGCGCCTGCCGCTCGTCGACGTATGTGCTGACCAGCTAAATGACGCTTCAGGATCCTGTTTATAAGCCTGCTTTTTCTTCAACTGGCGGGCTTTTTTCG  <  1:259320/150‑1                                                                                                                                                                                                                                                                                                                         GCTTATAAACCGGATCCTGAAGCGTCATTTAGCTGGTCAGCAAATACGTCGACGCGCGGCAGGCGCTAATCCACAATCAACGCCTGAGATTTTCACTCGTCAGTGTGAACACAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGC‑‑‑‑‑‑GAGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4231427‑4231272 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggggaAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTATTTGCTGACCAGCTAAATGACGCTTCAGGATCCGGTTTATAAGCCTGCTTTTTCTTCAACTGGCGGGCTTTTTTCG  >  NC_000913/4231311‑4231459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.