| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 78,830 | T→A | 6.2% | intergenic (+31/+18) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 78,830 | 0 | T | A | 6.2% | 312.4 / 6.3 | 112 | intergenic (+31/+18) | setA/leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| Reads supporting (aligned to +/- strand): ref base T (53/51); new base A (3/4); total (56/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 | |||||||||||
Only 100 of 112 total aligned reads displayed.
GGCGTTATTCAGGGAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGG > NC_000913/78686‑78978 | ggcGTTATTCAGGGAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGAc < 2:721375/150‑1 (MQ=255)ggcGTTATTCAGGGAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGAc < 2:1718121/150‑1 (MQ=255) tATTCAGGGAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGc > 2:888938/1‑150 (MQ=255) tATTCAGGGAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCGGGc < 1:1576038/150‑1 (MQ=255) tATTCAGGGAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACAGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGc > 1:97046/1‑150 (MQ=255) aTTCAGGGAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCGGGct < 2:1385979/150‑2 (MQ=255) aTTCAGGGAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGAATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAACCCCGGTCATTTGACCGGGCa > 1:1264763/1‑150 (MQ=255) ttCAGGGAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTATGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCGGGctt < 2:1220105/150‑3 (MQ=255) ttCAGGCAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTAAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCGGGctt < 2:1137141/150‑3 (MQ=255) aGGGAGCAATTGCCCAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAg‑gg < 2:895970/150‑1 (MQ=255) aGGGAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAg‑gg > 2:1062601/1‑150 (MQ=255) gggAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAg‑ggg > 1:769024/1‑150 (MQ=255) gggAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAg‑ggg > 2:1186595/1‑150 (MQ=255) ggAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGa > 2:438175/1‑150 (MQ=255) aaTTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAATACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTAGACCGGGCAAG‑TGGATTAAt > 1:1293502/1‑150 (MQ=255) aaTTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAAt < 1:613210/150‑1 (MQ=255) aTTGCACAAAGTGGGGGGCACGTTGCGGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATAATTTTTAACCGCAAAGGTTAAAGACGGTTGATGACGTGGACGATAGCGGAAAGCCCGGGCATTTGACCGGGCAAG‑GGGATTAAtt < 2:1452419/150‑1 (MQ=255) tGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCa < 1:1186595/150‑1 (MQ=255) gCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCAt < 2:568853/150‑1 (MQ=255) gCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGGTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCAt < 2:1043171/150‑1 (MQ=255) cacaAAGTTGGTGGCACTTTGCTGTCTACTTGGTAATTGCGGTTATTTCTGTTCTCGCATTATTTTTAACCGCAAATGTTATAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATa < 2:945724/150‑1 (MQ=255) cacaAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATa < 2:885131/150‑1 (MQ=255) cacaAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATa < 1:1023164/150‑1 (MQ=255) cacaAAGTTGGGGGCACTTTGCTGGCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGCGTGATTAAttaac < 1:275595/150‑4 (MQ=255) aaaGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAAc > 1:1618426/1‑150 (MQ=255) gTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGTAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCa > 2:1011157/1‑150 (MQ=255) gTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCa < 2:1633189/150‑1 (MQ=255) gggggCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTc > 2:1264983/1‑138 (MQ=255) ggggCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGgtt > 2:432239/1‑150 (MQ=255) cTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTg < 1:628233/150‑1 (MQ=255) cTTTGCGGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTg < 2:699592/150‑1 (MQ=255) ttGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCt < 1:685091/150‑1 (MQ=255) gCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTc < 2:700592/150‑1 (MQ=255) ggTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCAt < 1:1422503/149‑1 (MQ=255) gTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGTAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATa < 1:1011157/150‑1 (MQ=255) aCTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCg > 2:808518/1‑150 (MQ=255) gggTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCa > 2:1702322/1‑150 (MQ=255) gTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAAt < 2:1678374/150‑1 (MQ=255) aaTTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATgg > 1:504791/1‑150 (MQ=255) tttGCGGGTATTTCTGATGTCGCATTATTTTTATCCGCAAAGTTTAAAGACGTTTGCTGCCGTGGACGATAGCGGAAAGCCCGGTCATTTGCCCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGc < 2:315698/149‑1 (MQ=255) ttGCTGTTATTTCTGTTGTCTCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGcg < 1:967637/150‑1 (MQ=255) ttGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGcg < 2:463773/150‑1 (MQ=255) cGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGcgtcg > 1:898002/1‑150 (MQ=255) ggTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGcgtcgt > 1:50128/1‑150 (MQ=255) gTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGcgtcgtc > 2:343955/1‑150 (MQ=255) ttATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGcgtcgtcg < 1:1163050/150‑1 (MQ=255) ttATTTCTGTTGGCGCATTTTTATTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAATCGCAGGTTGTTTTGCTTCATAAGCGGCAATGGcgtcgtcg < 1:1464743/150‑1 (MQ=255) gtCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCTGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGt > 2:1520561/1‑150 (MQ=255) gCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGGCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGGTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAg < 1:342139/150‑1 (MQ=255) attattTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGCCCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGcc > 2:1570046/1‑150 (MQ=255) attattTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGTCGTCGTCGTGCTGCAAGGTAAGcc > 1:1564303/1‑150 (MQ=255) attattTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGcc > 2:549673/1‑150 (MQ=255) ttattTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTTATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGccc > 1:1352602/1‑150 (MQ=255) ttattTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTGCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGccc > 1:1208221/1‑150 (MQ=255) ttattTTTAACCGCAAAGGGGAAAGACGTTTGATGCCGTGGACGATAGCGGAAAGCACGGTCACTTGACCGGGCAAG‑GGGATTACTTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGccc < 2:1157152/150‑1 (MQ=255) tattTTTAACCGCAAAGGTTAAAGCCGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTTATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCa > 1:20983/1‑150 (MQ=255) attTTTAACCGCAAAGGTTAAAGACGTTTGATGTCGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCaa < 1:606606/150‑1 (MQ=255) tttttAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAAt > 1:1424014/1‑150 (MQ=255) tttttAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAAt < 1:1062601/150‑1 (MQ=255) ttttAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCTAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGGGTCGTCGTGCTGCAAGGTAAGCCCAATa > 1:59446/1‑150 (MQ=255) tttAACCGCTAAGGTTAAAGTCGTTTGATGCTGTGGACGACAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATGAAATCATAAACGCAGGTTGGTGTGCTTCATAAGCGGCAATGGCGGCGTCGTGCTGCAAGGTAAGCCCAATAc < 1:1562468/150‑1 (MQ=255) tttAACCGCAAAGGTTATATACGTTTGATGTCGTGGACGATAGCGGACAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCTTCGTCGTGCTGCAAGGTAAGCCCAATAc < 2:1317305/150‑1 (MQ=255) tttAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATAc > 2:1140386/1‑150 (MQ=255) tttAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATAc > 1:1386262/1‑150 (MQ=255) aaCCGCAAAGGTTAAAGACGTTTGATGACTTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAATGTAAGCCCAATACTGt < 1:733423/150‑1 (MQ=255) aCCGCAAAGGTTAAAGAAGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTc > 2:1297276/1‑150 (MQ=255) ccGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTTTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTcc < 1:1353060/150‑1 (MQ=255) ccGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTcc < 2:668203/150‑1 (MQ=255) ccGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTcc < 2:400828/150‑1 (MQ=255) ccGCAAAGGTTAAAGACGTTTGATGACGAGGACGATAGCGGAAAGCCCGGTCATTTGCCCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTcc < 2:841085/150‑1 (MQ=255) gCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAg > 1:710659/1‑150 (MQ=255) cAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAgc > 1:386088/1‑149 (MQ=255) gTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCACGGTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGtt < 2:353856/150‑1 (MQ=255) tAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTtca > 1:399443/1‑150 (MQ=255) aaaGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTtcat < 2:97046/150‑1 (MQ=255) aaaGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTtcat > 2:201033/1‑150 (MQ=255) aaaGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTtcat > 2:428444/1‑150 (MQ=255) aaGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTtcatc < 2:518121/150‑1 (MQ=255) aaGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTtcatc > 2:1367169/1‑150 (MQ=255) gACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTcatcat > 1:590102/1‑150 (MQ=255) gACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAg < 2:1472137/150‑1 (MQ=255) aCGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAgg < 2:321242/150‑1 (MQ=255) aTAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCAAGACCGTTCATCATGCAGTGGCGGCGGAAGGCAt > 1:1542425/1‑150 (MQ=255) tAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGGCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATc < 2:474497/150‑1 (MQ=255) tccccttgCCCGGTCAAATGCCCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGa > 2:779886/8‑150 (MQ=255) gCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTTTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGa > 2:65104/1‑150 (MQ=255) ccccttgCCCGGTCAAATGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCACACCGTTCATCATGCAGTGGCGGCGGATGGCTTCGAt > 2:947020/7‑150 (MQ=255) ggAAAGCCCGGTCTTTTGACCGGGCAAG‑GGGATTATTTCATACACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGGCGTCGTGCTGCAAGGTAAGCCCTATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATg < 1:20596/150‑1 (MQ=255) aaaGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTGTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCTGCCCGTTCATCGTGCAGTGGGGGCGGAAGGCATCGCTGGt > 2:1172596/1‑150 (MQ=255) aaGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTa < 1:1234363/150‑1 (MQ=255) aaGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTa < 1:1217978/150‑1 (MQ=255) aGCCCGGTCATTTGACCGGGCTAG‑GGGATTAATTCATAATCGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGAGCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTaa > 1:265197/1‑150 (MQ=255) gCCCGGTCAATTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTGGTTTTGCTTCATTAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCGAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCCGAAGGCATAGAAGGaaaa > 1:350490/1‑150 (MQ=255) cGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCg > 2:1709108/1‑150 (MQ=255) gTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGTAAGGCATCGATGGTAAAGCGAt > 2:1496764/1‑150 (MQ=255) cATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAg < 1:1325593/150‑1 (MQ=255) cATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATAATGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAg > 1:872359/1‑150 (MQ=255) cATTTGACCGGGCAAG‑GGGAGTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGATCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAg < 1:432239/150‑1 (MQ=255) aTTTGCCCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCTGTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAgg > 2:1574253/1‑150 (MQ=255) aTTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAgg > 1:1513296/1‑150 (MQ=255) | GGCGTTATTCAGGGAGCAATTGCACAAAGTTGGGGGCACTTTGCTGTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCATTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAG‑GGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGG > NC_000913/78686‑78978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |