mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 43.5% | 30.1 / 104.5 | 87 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 335 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 228016 = | NA (NA) | 20 (0.270) | 15/278 | 3.2 | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 4168373 | 66 (0.840) | 5 (0.120) +66 bp |
5/160 | 3.9 | 9.4% | noncoding (2/76 nt) | gltT | tRNA‑Glu |
| ? | NC_000913 | = 4209753 | 111 (1.410) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 62 (0.790) | 5 (0.120) +66 bp |
5/160 | 3.9 | 9.6% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 4209753 | 111 (1.410) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 385205 | 105 (1.330) | 14 (0.190) | 10/276 | 4.2 | 12.3% | intergenic (‑589/‑27) | yaiS/tauA | putative PIG‑L family deacetylase/taurine ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 385217 | 100 (1.340) | intergenic (‑601/‑15) | yaiS/tauA | putative PIG‑L family deacetylase/taurine ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 12 (0.160) | 10/272 | 4.2 | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 4536087 = | 139 (1.770) | 9 (0.120) | 9/274 | 4.5 | 6.3% | intergenic (+56/+527) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| ? | NC_000913 | 4536120 = | 138 (1.870) | intergenic (+89/+494) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase | |||||
| * | ? | NC_000913 | = 4190599 | 133 (1.690) | 8 (0.110) | 8/272 | 4.7 | 6.3% | intergenic (‑112/+136) | sroH/thiH | novel sRNA, function unknown/tyrosine lyase, involved in thiamine‑thiazole moiety synthesis |
| ? | NC_000913 | = 4190612 | 115 (1.570) | intergenic (‑125/+123) | sroH/thiH | novel sRNA, function unknown/tyrosine lyase, involved in thiamine‑thiazole moiety synthesis | |||||
| * | ? | NC_000913 | = 4583124 | 91 (1.160) | 8 (0.110) | 8/278 | 4.8 | 9.1% | intergenic (‑76/+125) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583237 | 73 (0.970) | intergenic (‑189/+12) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 2942880 | 114 (1.450) | 9 (0.120) | 8/276 | 4.8 | 7.6% | noncoding (185/206 nt) | gcvB | sRNA antisense regulator represses oppA, dppA, gltI and livJ expression, Hfq‑dependent |
| ? | NC_000913 | = 2942886 | 112 (1.510) | noncoding (191/206 nt) | gcvB | sRNA antisense regulator represses oppA, dppA, gltI and livJ expression, Hfq‑dependent | |||||
| * | ? | NC_000913 | 803336 = | 102 (1.300) | 8 (0.100) | 8/286 | 4.9 | 7.1% | intergenic (+16/‑167) | ybhI/ybhJ | putative DASS family tricarboxylate or dicarboxylate transporter/aconitase family protein |
| ? | NC_000913 | 803435 = | 111 (1.440) | intergenic (+115/‑68) | ybhI/ybhJ | putative DASS family tricarboxylate or dicarboxylate transporter/aconitase family protein | |||||