| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2917925 | 143 (1.150) | 20 (0.250) +TCGTGCAAATTCAATACATTGCAGAATTTTCGTAG |
8/128 | 9.2 | 17.9% | noncoding (38/95 nt) | RIP202 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP202 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3706060 | NA (NA) | noncoding (98/98 nt) | RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2917885‑2917925‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGCTCCGCTTATCAGGCCTACGAAAATTCTGC < NC_000913/3706060‑3706021 ||||||||||||||||||||||||||||||||||| TATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGG < 2:1538799/100‑1TATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGG < 1:1228652/100‑1 ATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAGATTCAATACATTGCAGAATTTTCGTAGGCCTGAGGCGCTCCGCTTATCAGGC < 2:1554362/100‑1 ATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGC < 2:1314784/100‑1 ATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGC < 2:2599416/100‑1 ATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGC < 2:2383413/100‑1 TGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCC < 1:1350711/100‑1 TGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCC < 1:2258844/100‑1 TGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCC < 2:1655742/100‑1 GCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCCT < 2:626533/100‑1 GCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCCT < 2:626337/100‑1 GCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCCT < 1:2396498/100‑1 GCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCCT < 1:291191/100‑1 CGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAGTGGTGCAAATGCAGTACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCCTAC < 2:1564910/100‑1 CGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCCTAC < 2:1999304/100‑1 CGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCCTAC < 2:2686219/100‑1 GGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCCTACc < 2:1591083/100‑2 GGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCCTACG < 2:2317322/100‑1 GCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCCTACGAAAATTC < 1:1269260/100‑1 TTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATAGATTGCAGAATTTTCGTAGGCCTGATGCGCTCCGCTTATCAGGCCTACGAAAATTCTGC < 1:1646901/100‑1 ||||||||||||||||||||||||||||||||||| TATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2917885‑2917925‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGCTCCGCTTATCAGGCCTACGAAAATTCTGC < NC_000913/3706060‑3706021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |