BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1287084	90 (0.370)	10 (0.050)	5/238	NT	7.7%	noncoding (153/171 nt)	rttR	rtT sRNA, processed from tyrT transcript
*	?	NC_000913	1287557 =	163 (0.780)	10 (0.050)	5/238	NT	7.7%	noncoding (66/85 nt)	tyrT	tRNA‑Tyr

Only 100 of 138 total aligned reads displayed.

GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTT  >  NC_000913/1286935‑1287233

agcgtTGCCGCAGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATT                                                                                                                                                       >  2:3213241‑M1/3‑150 (MQ=255)

 tCGTTGCCTGCTTCATCGCTCTCTCGATGTCGCTCGAGTCGAACCTTAGTCGAAGCTTCTCAGCCTTCCCCGCATGGGCATAATATTTTATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                      <  1:1478110/150‑1 (MQ=14)

 tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCTAGCCTAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGTATTCGCTTGAGAGTTCTGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                      <  1:329016/150‑1 (MQ=255)

 tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                      <  2:2507390/150‑1 (MQ=255)

 tCGGTGCCTGCGGCAACGATCTCTCGCTGTCGCTCGAGCCGAACCTTCGTCGAAGATTCTCATCCTTCCCCGCATGGGCATATTCTTTGATTTCGGATTAGCTTGAGATTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                      <  2:167096/150‑1 (MQ=14)

   ggtGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGATTTTTTTATTGCTGATTCGCTTGAGTTTTCAGTTAATTTTGAAAGTGATGGTGGTGGGGGAAGGATTACt                                                                                                                                                    <  1:3387449/148‑1 (MQ=14)

   gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAATCTTCTCATCCTTCCGCGCATGGGCAGTTTATTTTATTGCGGATTCGCTTGAGTGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACt                                                                                                                                                    <  1:3387482/150‑1 (MQ=17)

     tggccgCGGCACCGCTCTCGCGCTGACGCTCGCGCCGAACCTGCGTCGTAGCTTCTGATCGTTCCCCGCTTGGGCAGATTCCTTGATTGGGGCTTCGCTTGAGTGTTCCGGGACTTTTGCAAGTGATGGTGGTGGGGGAAGGATTACTCa                                                                                                                                                  <  2:2807712/145‑1 (MQ=14)

     ggcCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTCGTCGAAGCGTCTCATCCTTCCCCGCATGGGCAGAATATTTGAGTGCGGATTCGCTTGTGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaac                                                                                                                                                  <  1:3265626‑M1/149‑6 (MQ=255)

          gCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAGTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAGGGTGGTGGGGGAAGGATTACTCAGCGCt                                                                                                                                             >  2:1404753/1‑150 (MQ=255)

             gCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcg                                                                                                                                          <  1:3676578/150‑1 (MQ=255)

             gCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGTACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcg                                                                                                                                          <  1:3676492/150‑1 (MQ=255)

                     ctctcGCTGTCGCTCGTGCCGAACCTTTGGGGACGTGTGTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGATTGAGAGTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGc                                                                                                                                  <  2:933747/150‑1 (MQ=11)

                           cTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCGGCGCGCTTCGCCCTTCg                                                                                                                            >  1:3026870/1‑150 (MQ=255)

                            tGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCgg                                                                                                                           >  1:317831/1‑150 (MQ=255)

                                        cGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGc                                                                                                               >  2:1163082/1‑150 (MQ=255)

                                        cGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGGGGGGGAAGGATTACTCAGAGCTGCGCGCATCGCCCGTCGGGTCGATTCCTGc                                                                                                               >  2:2381618/1‑150 (MQ=14)

                                            ccctcgTCGAAGCTTCTCATCCGTCCCCGCTTTGGCAGAATACATGATTGCGGATTCGCTTGAGCGTTCCGGGACTTTTGCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTGGCCTGCGGCa                                                                                                           <  2:2740834/145‑1 (MQ=11)

                                              ttAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAc                                                                                                         <  2:3531221/150‑1 (MQ=255)

                                                 gTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGct                                                                                                      >  2:2199115/1‑150 (MQ=255)

                                                 gTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATT                                                                                                                                                       <  2:387427‑M1/101‑1 (MQ=255)

                                                 gTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATT                                                                                                                                                       >  1:387427‑M1/1‑101 (MQ=255)

                                                     aaGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGctctct                                                                                                  >  1:2549735/1‑150 (MQ=255)

                                                      aagttCTCATCCTTCCCCGCATGGGCAGATCTTTTGATTGCGGATTCGCTTGAGAGTTCAGGGTCTTTTGAAAGAGATGGTGGTGGGGGAAGGATTATTCGTCGCTTCGCTCCTCACCCTTCGGGCCGTTGCCTGTGGCAACGTtctctc                                                                                                 <  2:326567/147‑1 (MQ=14)

                                                         ttCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGATTCCTGCGGCAACGCACTCTCGcg                                                                                              >  2:870670/1‑149 (MQ=255)

                                                          tctcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACACAGATCTTCGAGCATCGCCCTTCGGGTCCTTGCATGACGCAAAGCGCTCTCGCta                                                                                             >  2:2070307/1‑149 (MQ=14)

                                                           cgcATCCCTCCCCGCTTGGGCAGACTTCTTGATTTGGTCGTAGCTTGAGTTTTCTGGGACTTTTGCAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTgg                                                                                            <  2:1956866/148‑1 (MQ=11)

                                                              aTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGct                                                                                                      <  1:1879834/137‑1 (MQ=255)

                                                              aTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGct                                                                                                      >  2:1879834/1‑137 (MQ=255)

                                                                ccTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGGGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTc                                                                                       <  1:3213241/150‑1 (MQ=255)

                                                                  ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGa                                                                                     >  2:3723984/1‑150 (MQ=255)

                                                                  ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTATCTCGCGGGCGCGCGa                                                                                     >  2:1802709/1‑150 (MQ=255)

                                                                  ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTTCGCCCATCGGGTCGTTGCATGCGGCAACGCGCTCTCTCTGgcgcaaat                                                                                     >  1:234145/1‑146 (MQ=14)

                                                                    cccccgatgggcaGAATATTTTATTGCGGATTCGCTTGCTAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAATcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccag                                                                                   <  2:1626274‑M1/144‑69 (MQ=255)

                                                                    ccccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGCCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGt                                                                                   <  2:2302768/150‑1 (MQ=255)

                                                                     cccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGAGTTCAGGGACTTATGAATGTCAGGCTGGTGGTCTAAGGAAAAATAAGCGAATCGCGCTTCGCCCTTAGGGTCGTTGCCTGCGGCAACGCGCTCTCGCTGGCGCGCGGGtg                                                                                  >  1:1603245/1‑149 (MQ=9)

                                                                      ccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCATGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCATCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTTGCGCTCGACTCg                                                                                 >  2:901808/1‑150 (MQ=255)

                                                                            gggCAGAATATTTGTTTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCtt                                                                           <  2:964219/150‑1 (MQ=255)

                                                                            gggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCACGAGTCGGACCtt                                                                           >  1:2913586/1‑150 (MQ=255)

                                                                              gCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTgg                                                                         <  1:654357/150‑1 (MQ=255)

                                                                               cAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTTCGCGCTTCGCCCTTCGGGTCGTTTCCTCAGGCAACGCTCTCTCGCTTGCGCTCGAGTCGAACCTTCGt                                                                        >  2:658672/1‑150 (MQ=14)

                                                                               cAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCGGGCGCGCGAGTCGAACCTTGGt                                                                        >  1:856377/1‑150 (MQ=255)

                                                                               cAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCACTCACGCTGGCGCGCGAGTCGAAACATGGt                                                                        >  1:518823/1‑150 (MQ=14)

                                                                                  aaTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACTCTCGCTGGCGCTCGAGTCGAAACATGGTCGa                                                                     >  1:3779755/1‑150 (MQ=255)

                                                                                           ttGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCa                                                            <  1:3329902/150‑1 (MQ=255)

                                                                                           ttGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACTCACGCTGGCGCTCGAGTCGAACCATGGTCGAAGCATCTCa                                                            >  1:3733102/1‑150 (MQ=255)

                                                                                                gATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCTCTGCGCGCTTCGCCCTTCGGGTCGATTCCTGAGGCAACGCTCTCACGCAGGCGCTCGAGTCGAACCTTGGTCGAAACATCTCATACta                                                       >  2:3181685/1‑149 (MQ=14)

                                                                                                 aTTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCTGCAACGCTCTCTCGGTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTc                                                      <  1:1094713/150‑1 (MQ=255)

                                                                                                  ttCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTAAGCGATGCGCGCTTCGCCCTTCGGGTCGTGGCATTAGGATAAGCTCTCTCTCTGGCCCTCGAGACGAACCGTGGTCGAAGCTTCTCATCCGTcc                                                     >  2:3075461/1‑150 (MQ=14)

                                                                                                     gCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCGGCCGCAAAGCACTCTCGCTGGCGCGCCACTCGAACCTAGGTCGAACCTACTCAACCTTCACCg                                                  >  2:85748/1‑150 (MQ=14)

                                                                                                     gCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCTTccccc                                                  >  1:3770021/1‑149 (MQ=255)

                                                                                                      ttgggaagttcaggGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatc                                                 <  1:2310802‑M1/144‑103 (MQ=255)

                                                                                                      cTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGc                                                 <  1:2957363/150‑1 (MQ=255)

                                                                                                        tGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAt                                               <  1:2199115/150‑1 (MQ=255)

                                                                                                        tGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAt                                               <  1:2199144/150‑1 (MQ=255)

                                                                                                         gagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGGGGCAACCCTCTCTAGCTGGCGCTCGGCTCGAACCGTGGTCGAAGCTTCACAACCATCCCCGCATg                                              >  1:491070/1‑150 (MQ=14)

                                                                                                           gagTTCAGGGACTTTTGAATGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                            <  1:2830468/150‑1 (MQ=255)

                                                                                                           gagTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                            <  2:397874/150‑1 (MQ=255)

                                                                                                             gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCAAAGCTCTCTCGCTGGCGCAAGAGTCGAACAGTGGTCGAAGCTTCACATCCTTCCCCGCATGGGCa                                          >  2:647430/1‑150 (MQ=14)

                                                                                                                cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACCCACTCTAGCTGGCGCTCGACTCGAACCATGGTCGAATCTTCTCAACCTTACCCCCATggggcgaa                                       >  1:1639157/1‑145 (MQ=14)

                                                                                                                 aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctccctgatcgggaagcgggg                                      >  1:652516‑M1/1‑37 (MQ=255)

                                                                                                                  gggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCACGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAata                                     >  2:2332814/1‑150 (MQ=255)

                                                                                                                    gACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctc                                                                                                 <  2:2289455‑M1/88‑55 (MQ=255)

                                                                                                                    gACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCATCGCCCTTCGGGGCGTTGCCAGGGGCAACGGTCTCTCGCTTGCGCTCGATTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCAGGGGGAAAAAAtt                                   >  2:1793686/1‑150 (MQ=11)

                                                                                                                     aCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgca                                  <  1:126702‑M1/150‑118 (MQ=255)

                                                                                                                      cTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCAACGATCTCTCGCTTGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCTTACCCGCAGGGGCAGGATAATTa                                 >  2:639481/1‑150 (MQ=11)

                                                                                                                      cTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGAGCGCTTCGCCCTTCGGGTCGTTGCCTGACGCAAAGCTCTCTCGCTGGCGCTCGATTCGAACATTGGTCGAAGCATATCATCCTTACCCGCAAGGGCAGAAAAATTa                                 >  2:519787/1‑150 (MQ=11)

                                                                                                                       ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTGGAAGCTTGGTGGAAGGATATCATACTTACCCCCATGGGGAGAATATTTaa                                >  1:976966/1‑150 (MQ=11)

                                                                                                                       ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACCCACACACCCTGGCGCTCGAGTCGAACCATGGTCGAAACATAACAAACATACCCCCAAGGGCACAATATTTaa                                >  1:3024745/1‑150 (MQ=11)

                                                                                                                           gAAAGTGATGGTGGTGGGGGATGGAGTACTTAGCGCTTCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGc                            <  1:1268680/150‑1 (MQ=255)

                                                                                                                           gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGc                            <  2:297688/150‑1 (MQ=39)

                                                                                                                           gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCCCTCGCTGGCGCTCGAGCCGACCCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGc                            <  2:1886596/150‑1 (MQ=255)

                                                                                                                           gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCACTCCCTGGCGCACGAGACGAACCTAGGTCGAAGCTTCTCATACTTACCCCCCAGGGCAGAATAATTAATTGc                            >  2:1382188/1‑150 (MQ=11)

                                                                                                                                 gATGGTGGTGGGGGAAGTATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCATCGCTCTCTCGCTGGCGCTCGAGTCTAACCTTGGTCGAAGCTTCTCATCCTTCCCCGGATGGGCAGAATATTTAATTGCGGATTc                      <  1:3798616/150‑1 (MQ=255)

                                                                                                                                 gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGt                                                                                   <  1:3624222/89‑1 (MQ=33)

                                                                                                                                 gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGt                                                                                   >  2:3624222/1‑89 (MQ=33)

                                                                                                                                   tggtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgac                    >  1:367707‑M1/1‑19 (MQ=255)

                                                                                                                                   tggtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACCCACACACCCGGGCCCTCGAGGCGAACCATAGTCGAAGCATCTCAAACATCCCCGCAAGGGCAGAAAATTTTATTGAGGAttagc                    >  1:4117772/1‑147 (MQ=0)

                                                                                                                                    ggtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacg                   >  2:3776710‑M1/1‑18 (MQ=255)

                                                                                                                                    ggtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGtt                   <  2:3669682/150‑1 (MQ=37)

                                                                                                                                     gtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgc                  >  1:1260305‑M1/1‑17 (MQ=255)

                                                                                                                                      tggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcg                 >  1:1841523‑M1/1‑16 (MQ=255)

                                                                                                                                       ggtggtGTAAGGATTcgttccttcgatgtcgttgtcgtcagatttacagtctgctccccttggccgctcgggaaccccaacacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgc                <  1:772991‑M1/150‑136 (MQ=255)

                                                                                                                                        gtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgcc               >  1:2491292‑M1/1‑14 (MQ=255)

                                                                                                                                        gtggGGGAAGGATTcgaaccttcgaagtcgatgacgacagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgcc               >  1:2491244‑M1/1‑14 (MQ=255)

                                                                                                                                        gtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCGTGGGGCAACGGTCTCTCGCTGGCGCTCGAGTCGAACATTGGTCTAATGTTGTGATAATTGACCGGATGGGCAGAATATTTTATTGCGGTTTGGTTgggt               >  2:2434511/1‑149 (MQ=11)

                                                                                                                                         tggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccg              <  1:105522‑M1/150‑138 (MQ=255)

                                                                                                                                         tggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccg              >  2:3968292‑M1/1‑13 (MQ=255)

                                                                                                                                           ggggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgct            <  1:969579‑M1/150‑140 (MQ=255)

                                                                                                                                           ggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGGTTCTCAACCTACCCCCCGAGGGCCGAAAAGTTAATTGAGGAAGAGTTGGGTAGt            >  2:3099355/1‑150 (MQ=11)

                                                                                                                                            gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctg           >  2:3462195‑M1/1‑10 (MQ=255)

                                                                                                                                            gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgcttttt                                                                    >  2:693775‑M1/1‑10 (MQ=255)

                                                                                                                                            gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgcttttt                                                                    <  1:693775‑M1/93‑84 (MQ=255)

                                                                                                                                             ggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgt          >  2:1737195‑M1/1‑9 (MQ=255)

                                                                                                                                              gAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgta         <  2:4059789‑M1/150‑143 (MQ=255)

                                                                                                                                               aaGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaa        >  1:764610‑M1/1‑7 (MQ=255)

                                                                                                                                                    ttcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtgt   >  1:1965138‑M1/1‑2 (MQ=255)

                                                                                                                                                    ttcgaaccttcgaagtcgatgacggcagatttaca                                                                                                                      >  1:1334192‑M1/1‑2 (MQ=255)

                                                                                                                                                    ttcgaaccttcgaagtcgatgacggcagatttaca                                                                                                                      <  2:1334192‑M1/35‑34 (MQ=255)

                                                                                                                                                     tcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtgtt  <  1:71518‑M1/150‑150 (MQ=255)

GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTT  >  NC_000913/1286935‑1287233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.