| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 164,620 | C→T | 5.7% | intergenic (+86/‑110) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 164,620 | 0 | C | T | 5.7% | 407.1 / 10.2 | 126 | intergenic (+86/‑110) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base C (47/69); new base T (3/4); total (53/73) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 | |||||||||||
Only 100 of 129 total aligned reads displayed.
ATGTCTGGCCGGACGACCCGGCAAATACTGCA‑CCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCAAAGGGA > NC_000913/164473‑164769 | aTGTCTGGCCGGACGCCCCGGCAAATCCTGCA‑CCGACGCGACGGACGAAAAAGTATTCCAACGGTTGGTTTACACCCTCTCCCTGTGGGAGTGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCaa < 2:424138/150‑1 (MQ=38) tGTCTGGCCGGACCACCCGCAAAATAC‑GCACCCGACGCGACGTACAAAAAATTTTTCTTATGTTTTTTTTTCCCCCTCCCCGGGGGGGAGGGGGCGGGGGT‑GCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg < 1:1287468/150‑1 (MQ=255) gtgtGGCCGGCCGACCCGCCAAATACTGCA‑CCGACGCGCGGGACTAAAATTTAGTCGTTTGGTTGTTTTTCTCCCTCTCCCTGGGTGTGTGGGCGGGGGT‑GAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAgg < 1:863919/147‑1 (MQ=255) gTCTGGCCGGACGACCCGGCAAATACTGCA‑CCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTGCGCCCCCGCCCCAAACCACACCCACaacg > 1:3299418/1‑148 (MQ=37) gTCGGGCCGGACGACCCGGCAAATACGGCA‑CCGACGCGAGGGACTAAAATTTTTTGGTATGTTTGTTTTTCCCCCTCGCCGTGGGGGTTTGGGCGGGGGT‑GCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAgg < 1:864020/150‑1 (MQ=255) tCTGGCCGGACGACCCGGCAAATACTGCA‑CCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCACggg > 2:2346451/1‑150 (MQ=255) tCTGGCCGGACGACCCGGCAAATACTGCA‑CCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTGGACCCACACCCAAACCCAATCCCACAAggg > 1:1672150/1‑150 (MQ=37) gCCGTACTACCCTGAAAATATTTCA‑CCGAGGCTACGGACTAAAAATTTTTCTTAAGTTTGTTTTTATCCCTCTCCCTTTGGTATTGGCCCGGGGT‑GTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTTGAGGGagag < 2:2992687/150‑1 (MQ=255) gCCGCACTACCCGGAAAATAGTGCA‑CCTACGCGACTGACTAAAAATTTTTCTTACGGTTGTTTTTCTCCCTCTCCATGTGGGTGAGGGCCGGGTT‑GTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCATCTCCCTTTAGGGagag < 2:1924299/150‑1 (MQ=255) ccGGCCGCCCCGGCAAATCCGGCC‑CCGCCGCGCCGGCCGAACACTTATTCGTAGGGTGGGTTGGCGCCCTCGCCGGGGGGGTGTGGGCCGGGGG‑GCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTTGAGGGAGAgg < 2:2490384/150‑1 (MQ=255) ggACGACCCGGCAAATACTGCA‑CCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCCGCGCGCCCGTGCCCCCCCACCCAAACCCCCGCCCCCCAGGGGGTgggg > 2:1312561/1‑150 (MQ=37) gacCCGGCAAATACTGCA‑CCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCCTCAGCGCGCACGGGCCCCCCCCCCCCAACCCCCAACCCCAAGGGGGAGGGGGCCg > 2:2460728/1‑150 (MQ=25) cGGCAAATACTGCA‑CCGACGCGACGGACGAAAATTTATTGGTATGTTTGGTTTTCTCCCTCTCCCTGTGGGTTAGGGGGGGGGT‑TAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGTGAGGGGACCGATCg < 1:2555745/150‑1 (MQ=37) ggaaaaTCCTGCA‑CCCCCGCGCGGGACCAAAAAGTTTTCCTATGGTTTGTTTTCGCCCCCTCCCTGTGGGTGTGGGCGGGGGT‑GCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGa < 1:2568859/147‑1 (MQ=255) ggCAAATACTGCA‑CCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTGGACCCGCACCCCAACCCACGCCCACCAGGGCGGGGGGGCCGAtagg > 1:235409/1‑147 (MQ=25) aaTACTGCA‑CCGACGCGAGGGACTATAAAGTTTTGGTTCGGTGGGTTTTCTCCCTCTCCGTGTGGTTGTGGGCGGGGGT‑GAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGcac < 1:3979752/150‑1 (MQ=255) aCTGCA‑CCGACGCGACGGACGAAAATGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCGGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACaaa < 1:3059213/150‑1 (MQ=255) aCTGCA‑CCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTGGGCCCACCCCCCAAACCACACCCACAAAGGGGAGGGGGCCCCTCGCGCACcaa > 2:3544571/1‑150 (MQ=21) gCA‑CCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCACTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCAACAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAttt < 2:1008722/150‑1 (MQ=255) a‑CCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTGCCCCCACACCCGAAACCACACCCGCCCGGGCGGGGGGGCCGCTCGCGCCCaaaagttt > 1:2738035/1‑145 (MQ=21) ccgccgCGACGGACTAAAATTTTTGCTTATGGTTGTTTTCCTCCCTCTCCGTGGGGTAGTGGGCGGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 1:149421/150‑1 (MQ=255) ccGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTGACCCGCAACCGAAACCACCACCAACAGGGGGTGGGGGCCGATCCAGCCCCAAtatttt > 2:1299635/1‑148 (MQ=18) ccggacgAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGGGGGAGCGGGCGGGGGT‑GCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtc < 1:1342319/149‑1 (MQ=255) acggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCAAAACCAAACCCGCAAGGGAGAGGGGGCCGATCCAGCCCAAATTTTGGGAGatata > 2:607407/1‑149 (MQ=37) cttttCTTACGGTGGTTTTCCCCCCTCGCCGGGTGGGTGTGGGCGGGGTT‑GCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 2:3125265/147‑1 (MQ=255) aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTGCACCCACACCCGAACCCACACCCGCACCGGCGAGGGGACCCATCGAGCACAAAAATTGCGAGATATATTCTTCATTCTTGt > 2:2077266/1‑150 (MQ=21) tcttacggttggttTTCTCCCCCGCCCGGGGGGTGAGGGCGGGGGG‑GCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCTAGGGTGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 1:2313049/144‑1 (MQ=255) aaGGTTGGTTTTCTCCCTCACCCTGTGGGAGTGGGCCGGGGT‑GTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCATGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACaga < 2:2983639/150‑1 (MQ=255) ttgtttTTCGCCCGCGCCGTGGGGGTGTGGGCGGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 1:1964254/150‑1 (MQ=255) ttggttTTCTCCCTCTCCCTGTGGGTGTGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 1:1002772/150‑1 (MQ=255) gtttttCTCCCTCTCCGGGTGGGTGTGGGCGGGGGT‑GCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 1:215174/148‑1 (MQ=255) ggttTTCTCCCTCTCCGTGTGGGAGAGGGCGGGGGT‑GAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 2:1430688/150‑1 (MQ=255) ggttTTCTCCCACGCCCTCTGGGAGAGGGCCGGGGT‑GCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 1:4112936/150‑1 (MQ=255) gccctctccgtGGGGTTGTGGGCGGGGGT‑GTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATc < 1:3886965/149‑1 (MQ=255) cctctccctGTGGGTGTGGGCGGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCgg < 1:2856379/150‑1 (MQ=255) ccctGTGGGAGAGGGCCGGGGT‑GAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCttt < 1:3769649/150‑1 (MQ=255) ccggtgGGAGGGGGCCGGGGT‑TCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACCGAAGAACAGAAAATCGGGCtttt < 1:1575843/147‑1 (MQ=255) gtgtgggtgtgggCGGGGGT‑GCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTg < 1:2846230/149‑1 (MQ=255) ctGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCGCCCGCACCCGAACCCACACCCGCAAAGGAGAGGGGACCGCTCGAGCACAAATTTTGTGAGATATAATCTTATTTCTTTTTACAGAAGAACAGACAAAAGGGCgtttt > 2:3647755/1‑149 (MQ=255) ctGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCGCCCCCAAACCCACAACCGCAAGGGGGAGGGGGCCGATCGGGCCCAAATTTTGAGAGATATATTATTCTGTCGTTTTACAGAAGAACAGGAAATGGGGCgtttt > 2:4051447/1‑149 (MQ=19) ctGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCACTCCCACAAGGGAGTGGGGACCCATAGAGCACAAAAGTTGAGTGATATAATCTTAAGTATTGTAACACAAAAACAGAAAAAAGGGGttttt > 2:4051601/1‑149 (MQ=255) tgtgGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCACACCCGAACCCACACCCGCCAGGGCGTGGGGGCCGCACGTGCCCAAAAGTTTAGTGATATATTATTATGTCGTGTAAAAGAAAAAAAAAAAAAAGGGCGTTTgc > 2:2044135/1‑150 (MQ=255) gtgGGAGAGGGCGGGGGT‑GAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcg < 2:682178/150‑1 (MQ=255) gtgGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcg < 1:1726931/150‑1 (MQ=255) gggAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTGGGCCCGCACCCAAAAACACACCCAAAAAGGAGGGGGGCCCGATGGAGCACAAAATTTGAGAGAAATATTAATTTGTGTTTGAAAAGTAGAACAGGAAATAGGGCtttttgggg > 2:3726507/1‑145 (MQ=255) ggAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:3108117/150‑1 (MQ=255) gagcGGGCCGGGGT‑GTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTg < 1:2067073/150‑1 (MQ=255) gagaGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCACAACCAAAACCACTACCGCAACGGGGGGGGGACCCATCGAGCACAAAATTTGAGGGATATATTATTAAGTCTTTTAAAAGAAGAACAGAAAAAAGGGCtttttagccag > 2:1019019/1‑143 (MQ=255) agGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCACAACCCAACCCACACCCAAAAGGGGGAGGGGACCGATCGCGCACAAAATTTTTGAGATAAATTAATAATTGTTGTTACAGAAGAACACAAAATACGGCTTTTTGGCCGGAat > 2:1697249/1‑150 (MQ=255) ggCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCACACCCAAAACCACTCCCACAAGGGAGAGGGGGCCGATCGAGCACAAATTTTGAGAGATATCATCATATGTCGTGTAACAGTAGAACACACAATCGGGCGTTTGCGCCGGAaaat > 2:1391039/1‑150 (MQ=255) ggCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCAAAACCAAACCCACACCCGCAAGGGCGAGGGGGCCGATCGAGCACAAATTTTTAGAGATATAATCTTCAGTCTTGTAAAATAAGAACAGAAAATACGGCTTTTTCGCCGGAatat > 2:3445941/1‑150 (MQ=255) gCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCAAAACCCCTCCCACGAGGGGGAGGGGCCCCAAAGCGCCCCAATTGTGTGATAAAAAATCTTCTGGGTTGTAAGACAACAACCGACAAACGGGCGTTTTGGGCGGAATAtt > 2:3026520/1‑150 (MQ=255) cGGGGG‑GAGGGCCTCAGCGCGCACGGTCACCCTCACCCGAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTCGCGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGACAATCGGGCTTTTGCGCCGGAATATTGc < 2:3240225/150‑1 (MQ=255) ggggg‑gCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 1:42854/150‑1 (MQ=255) ggggTGGAGGCCCTCAGCGAGCACGTTCACCCTCAACCTAACCCTCTCCCTCAAGGGAGAGGGGACCGACCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTATCAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 1:3796051/150‑1 (MQ=255) ggggT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:2897497/150‑1 (MQ=255) ggggT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 1:2346451/150‑1 (MQ=255) gggT‑GAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCgg < 2:1357092/150‑1 (MQ=255) ggtttgggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 2:789661/145‑1 (MQ=255) gT‑GAGGGCATCAGCGCGCACGTGCACCCACACCCAAAACCTCACCCACAAGGGAGAGGGGGCCCATCCCGCCCAAAATTTTTGGGTTATATTATTAAGTGGTTGAACAGAAGAACAGCAAAAAGGGCGTTTTCGCCCGGAAATTTCggcg > 2:3325314/1‑148 (MQ=255) ggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 2:2494200/150‑1 (MQ=255) gccATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 1:3201739/148‑1 (MQ=255) ttCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGa < 2:302558/150‑1 (MQ=255) tcaccctcacccTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGAc < 1:1173682/150‑1 (MQ=255) accctcaccctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACcg < 1:1302820/150‑1 (MQ=255) ccctcaccctAACCCTCTCCCTCAAGGGAGAGGGGTCCGATCGAGCACAAATTTTGAGAGATATCTTCTTCGGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGTAAAAGCATGGCCGGGAATGACcgc < 2:2727752/150‑1 (MQ=255) cctcaccctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACcgcg > 1:2828505/1‑150 (MQ=255) ctcaccctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGa < 1:1641908/150‑1 (MQ=255) ctcaccctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGa < 1:1753129/150‑1 (MQ=255) ctcaccctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCGGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGa > 2:2708203/1‑150 (MQ=255) tcaccctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGACTGACCGCGAg > 1:2669597/1‑150 (MQ=255) tcaccctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAg < 2:1780613/150‑1 (MQ=255) caccctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGc < 2:2188273/150‑1 (MQ=255) ccctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCa < 2:1403191/150‑1 (MQ=255) cctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCac > 2:2685535/1‑149 (MQ=255) cctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCaa > 2:1206220/1‑150 (MQ=255) cctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAAATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCaa > 2:3283628/1‑150 (MQ=255) ctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCact > 2:548951/1‑148 (MQ=255) ctAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAAt > 2:548796/1‑150 (MQ=255) tAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAAtt > 1:2512305/1‑150 (MQ=255) tAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGAATGGCCGGGAATGACCGCGAGCCAAtt > 1:2512360/1‑150 (MQ=255) tccccTCTCCCTTGAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTg > 1:2387500/3‑150 (MQ=255) ccTCTCCCTTGAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGAc > 1:3473611/1‑150 (MQ=255) ccTCTCCCTTGAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGAc > 1:663092/1‑150 (MQ=255) ccTCTCCCTCCCGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGACTGACCGCGAGCCACTTggcc > 2:831648/1‑148 (MQ=255) ctctCCCTCAAGGGAGGGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACg > 2:3540799/1‑150 (MQ=255) ctctCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACg > 2:2341100/1‑150 (MQ=255) ctcCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGACAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCa > 1:1681592/1‑150 (MQ=255) ctcCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCa > 2:109427/1‑150 (MQ=255) cccTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCaaa < 1:1019019/150‑1 (MQ=255) ccTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCAAAg < 2:1760347/150‑1 (MQ=255) ccTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCAAAg < 1:1222080/150‑1 (MQ=255) ccTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAACAACACAAAATCGGGCTTTTGCGCCAGAATATTGCGGACAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCAAAg < 1:2394456/150‑1 (MQ=255) cTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCAAAgg < 2:2412512/150‑1 (MQ=255) cTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCAAAgg > 1:762517/1‑150 (MQ=255) cTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCAAAgg < 1:3503293/150‑1 (MQ=255) cTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCAAAgg < 1:2125531/150‑1 (MQ=255) cTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATAGCGGAGAAAAATCATGGCCGGGAATGACCGCGAGCCAATTGGACGCAAAgg > 2:1011954/1‑150 (MQ=255) tCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCAAAggg > 2:3045671/1‑150 (MQ=255) cAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCAAAGGGa > 1:71213/1‑150 (MQ=255) | ATGTCTGGCCGGACGACCCGGCAAATACTGCA‑CCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGCAAAGGGA > NC_000913/164473‑164769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |