New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	878637 =	130 (1.220)	9 (0.090)	8/258	NT	7.3%	intergenic (+6/‑105)	bssR/yliI	repressor of biofilm formation by indole transport regulation/soluble aldose sugar dehydrogenase
	?	NC_000913	878662 =	107 (1.080)					intergenic (+31/‑80)	bssR/yliI	repressor of biofilm formation by indole transport regulation/soluble aldose sugar dehydrogenase

AGAGCGGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/878794‑878637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctcccccttCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCA  >  NC_000913/878662‑878810                                                                                                                                                                                                                                                                                                                     cGAGCGGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTC                                                                                                                                                               <  1:1349410/149‑1  GAGCGGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCTGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCT                                                                                                                                                              <  1:933184/150‑1    GCGGAAGAAAGACAAATAAGGGGCACTAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATGTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCC                                                                                                                                                            >  1:280198/1‑150    GCGGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCC                                                                                                                                                            <  2:1788287/150‑1     CGGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCC                                                                                                                                                           >  2:1088970/1‑150     CGGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCC                                                                                                                                                           <  2:1280368/150‑1      GGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCC                                                                                                                                                          >  2:588848/1‑150      GGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCC                                                                                                                                                          <  2:1133223/150‑1       GAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGTAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCC                                                                                                                                                         <  2:310676/150‑1       GAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGTGGGAGACGCTTTCTCCCCC                                                                                                                                                         >  2:1307567/1‑150       GAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCC                                                                                                                                                         >  1:1801574/1‑150       GAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCC                                                                                                                                                         <  2:1657608/150‑1                                                                             TTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTATAAATGAATTTGTTATCTCCTCCCCTGACTACGCTTTAAGCCAGAGTCAA                                                                                   >  2:259689/1‑150                                                                                                      AACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAAT                                                          >  2:1054302/1‑150                                                                                                                                 ACATGAAGGGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCATTATTTGTC                               >  2:988153/1‑150                                                                                                                                  CATGAAGGGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCT                              >  2:1576258/1‑150                                                                                                                                  CATGAAGGGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGAATACGCTTTAAGCCAGAGTCTATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCT                              >  2:2043/1‑150                                                                                                                                    TGAAGGGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTT                            >  1:1730370/1‑150                                                                                                                                     GAAGGGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTC                           >  2:683881/1‑150                                                                                                                                      AAGGGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCT                          >  1:1057636/1‑150                                                                                                                                         GGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCC                       >  1:825666/1‑150                                                                                                                                                     TCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCG           <  1:814022/150‑1                                                                                                                                                     TCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCG           <  1:1280368/150‑1                                                                                                                                                      CTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGACCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGG          >  2:1481979/1‑150                                                                                                                                                        CCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCACCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCa        >  2:54918/1‑149                                                                                                                                                          CCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCC      <  1:1808633/150‑1                                                                                                                                                              TCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCA  >  2:81905/1‑150                                                                                                                                                                                                                                                                                                                     AGAGCGGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/878794‑878637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctcccccttCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCA  >  NC_000913/878662‑878810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.