| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3839241 = | 110 (1.030) | 6 (0.060) | 3/266 | NT | 5.4% | coding (753/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 |
| ? | NC_000913 | 3839282 = | 104 (1.020) | coding (712/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
ATTATCAGCACCACTTACATTCAGCAGACCGGGCTTTCTCCGGTGCACGACAGCGTATTTATTGAAGATAAGAATTCGCCGTATGTGAATATTTTGGTGGCACGGGAAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCAATCTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3839393‑3839241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttatTATCTTCCCGTGCCACCAAAATATTCACATACGGCGAATTCTTATCTTCAATAAATACGCTGTCGTGCACCGGAGAAAGCCCGGTCTGCTGAATGTAAGTGGTGCTGATAATCGCTACATCAACTTTGGGATCATCCAGTACGCGCGGG > NC_000913/3839282‑3839430 ATTATCATCACCACTTACATTCAGCAGACCGGGCTTTCTCCTGTGCACGACAGCGTATTTATTGAAGATAATAATTCGCCGTATGTTAATATTTTTGTGGCACGGTAAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCAATCT < 1:1546939/150‑1ATTATCAGCACCACTTACATTCAGCAGACCGGGCTTTCTCCGGTGCACGACAGCGTATTTATTGAAGATAAGAATTCGCCGTATGTGAATATTTTGGTGGCACGGGAAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCAATCT < 1:20280/150‑1 TTATCAGCACCACTTACATTCAGCAGACCGGGCTTTCTCCGGTGCACGACAGCGTATTTATTGAAGATAAGAATTCGCCGTATGTGAATATTTTGGTGGCACGGGAAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCAATCTT < 1:247652/150‑1 TATCAGCACCACTTACTTTCAGCAGACCGGGCTTTCTCCGGTGCACGACAGCGTATTTAATGAATATAAGAATTCGCCGTATGTGAATATTTTTGTGGCACGGGAAGATAATAAGAATGCAGATAACGTGAAGGAATTTCTGCAATCTTA < 1:294639/150‑1 TATCAGCACCACTTACATTCCGCAGACCGGGCTTTCTCCGGTGCACGACAGCGTATTTATTGAAGATAAGAATTCGCCGTATGTGAATATTTTGGTGGCACGGGAAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCAATCTTA > 1:586603/1‑150 TATCAGCACCACTTACATTCAGCAGACCGGGCTTTCTCCGGTGCACGACAGCGTATTTATTGAAGATAAGAATTCGCCGTATGTGAATATTTTGGTGGCACGGGAAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCAATCTTA > 1:791393/1‑150 ATCAGCACCACTTACATTCAGCAGACCGGGCTTTCTCCGGTGCACGACAGCGTATTTATTGAAGATAAGAATTCGCCGTATGTGAATATTTTGGTGGCACGGGAAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCAATCTTAT < 2:466635/150‑1 ATCAGCACCACTTACATTCAGCAGACCGGGCTTTCTCCGGTGCACGACAGCGTATTTATTGAAGATAAGAATTCGCCGTATGTGAATATTTTGGTGGCACGGGAAGATAATAAGAATACAGAAAACGTGAAGGAATTTCTGCAATCTTAT > 1:962054/1‑150 CGGGAAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCAATCTTATTATCTTCCCGTGCCACCAAAATATTCACATACGGCGAATTCTTATCTTCAATAAATACGCTGTCGTGCACCGGAGAAAGCCCGGTCTGCTGAATGTAAG > 2:241412/1‑150 CGGGAAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCAATCTTATTATCTTCCCGTGCCACCAAAATATTCACATACGGCGAATTATTATCTTCAATAAATACGCTGTCGTGCACCGTAGAAAGCCCGGTCTGCTGAATGTAAG > 2:735386/1‑150 GGAAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCAATCTTATTATCTTCCCGTGCCACCAAAATATTCACATACGGAGAATTCTTATCTTCAATAAATACGCTGTCGTGCACCGGAGAAAGCCCGGTCTGCTGAATGTAAGTG > 2:197695/1‑150 GGAAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCAATCTTATTATCTTCCCGTGCCACCAAAATATTAAAATACGGCGAATTCTTATCTTCAATAAATACGCTGTCGTGCACCTGAGAAAGCCCTGTCTGCTGAATGTAAGTG > 2:203827/1‑150 AAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCATTCTTATTATCTTCCCGTGCCACCAAAATATTCACATACGGCGAATTCTTATCTTCAATAAATACGCTGTCGTGCACAGGAGAAAGCCCGGTCTGCTGAATGTAAGTGGT > 1:1180730/1‑150 AAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCATTCTTATTATCTTACCGTGCCACCAAAATATTCACATACGGCGATTTCTTATCTTCAATAAATACGCTGTCGTGCACCGGAGAAAGCCCGGTCTGCTTAATGTAAGTGGT > 1:1321850/1‑150 CTTATTATCTTCCCGTGCCACCAAAAAATTAACATACGGCGAATTCTTATCTTCAATAAATACGCTGGCGTGAACCGGAGAAAGCCCGGTCTGATTAATGTAAGTGGTGCTGATAATCGCTACATCAACTTTGGGATCATCCAGTACGCG < 1:906893/150‑1 TTATTATCTTCCCGTGCCACCAAAATATTCACATACGGCGAATTCTTATCTTCAATAAATACGCTGTCGTGCACCGGAGAAAGCCCGGTCTGCTGAATGTAAGTGGTGCTGATTATCGCTACATCAACTTTGGGATCATCCAGTACGCGC > 2:430055/1‑150 TTATTATCTTCCCGTGCCACCAAAATATTCACATACGGCGAATTCTTATCTTCAATAAATACGCTGTCGTGCACCGGAGAAAGCCCGGTCTGCTGAATGTAAGTGGTGCTGATAATCGCTACATCAACTTTGGGATCATCCAGTACGCGC > 1:1522480/1‑150 ATTATCTTCCCGTGCCACCAAAATATTCACATACGGCGAATTCTTATCTTCAATTAATACGCTGTCGTGCACCGGAGAAAGCCCGGTCTGCTGAATGTAAGTGGTGCTGATAATCGCTACATCAACTTTGGGATCATCCAGTACGCGCGG > 2:148912/1‑150 ATTATCTTCCCGTGCCACCAAAATATTCACATACGGCGAATTCTTATCTTCAATAAATACGCTGTCGTGCACCGGAGAAAGCCCGGTCTGCTGAATGTAAGTGGTGCTGATAATCGCTACATCAACTTTGGGATCATCCAGTACGCGCGG > 1:1393647/1‑150 TTATCTTCCCGTGGCACCATAATATTCACATACGGCGAATTCTTATCTTGAATAAATACGCTGTCGTGCACCGGAGAAAGCCCGGTCTGCTGAATGTAAGTGGTGCTGATAATCGCTACATCAACTTTGGGATCATCCAGTACGCGCGGG < 1:587893/150‑1 ATTATCAGCACCACTTACATTCAGCAGACCGGGCTTTCTCCGGTGCACGACAGCGTATTTATTGAAGATAAGAATTCGCCGTATGTGAATATTTTGGTGGCACGGGAAGATAATAAGAATGCAGAAAACGTGAAGGAATTTCTGCAATCTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3839393‑3839241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttatTATCTTCCCGTGCCACCAAAATATTCACATACGGCGAATTCTTATCTTCAATAAATACGCTGTCGTGCACCGGAGAAAGCCCGGTCTGCTGAATGTAAGTGGTGCTGATAATCGCTACATCAACTTTGGGATCATCCAGTACGCGCGGG > NC_000913/3839282‑3839430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |