New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4633091 =	NA (NA)	3 (0.030)	3/262	NT	2.5%	noncoding (1/140 nt)	REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913	4633169 =	119 (1.160)					noncoding (79/140 nt)	REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Frequency below/above cutoff threshold.

CCGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCC‑‑‑‑ACGTCTTATCAGGCCTACaaa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4633243‑4633091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTA  >  NC_000913/4633169‑4633317                                                                                                                                                                                                                                                                                                                    CCGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCC‑‑‑‑ACGTCTTATCAGGCC                                                                                                                                                          >  1:17365/1‑150  CGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCC‑‑‑‑ACGTCTTATCAGGCCT                                                                                                                                                         <  1:481703/150‑1     GTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCC‑‑‑‑ACGTCTTATCAGGCCTACA                                                                                                                                                      >  1:1437237/1‑150      TATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCC‑‑‑‑ACGTCTTATCAGGCCTACAA                                                                                                                                                     <  1:593110/150‑1       ATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCC‑‑‑‑ACGTCTTATCAGGCCTACAAA                                                                                                                                                    <  1:816779/150‑1                                                                 TACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCC‑‑‑‑ACGTCTTATCAGGCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGG                                                                                          >  1:1169335/1‑150                                                                     GGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCC‑‑‑‑ACGTCTTATCAGGCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCT                                                                                      >  2:774397/1‑150                                                                                              TCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGGCGTGAACGCCTTATCCGACCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGAGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAAC                                                                 >  1:376270/1‑150                                                                                                                                                         CCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGC      <  2:361196/150‑1                                                                                                                                                          CTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCG     >  2:658218/1‑150                                                                                                                                                             CAAATACCCGTAATTTCAATATGTTTGGGAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTA  <  1:505143/150‑1                                                                                                                                                                                                                                                                                                                    CCGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCC‑‑‑‑ACGTCTTATCAGGCCTACaaa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4633243‑4633091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTA  >  NC_000913/4633169‑4633317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.