New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	696863 =	26 (0.240)	11 (0.110) +GAAGAAACAATC	9/254	NT	17.0%	intergenic (‑33/+2)	glnW/glnU	tRNA‑Gln/tRNA‑Gln
	?	NC_000913	= 697134	92 (0.860)					intergenic (‑1/+379)	metT/asnB	tRNA‑Met/asparagine synthetase B

ACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAACC  >  NC_000913/696725‑697011                                                                                                                                           |                                                                                                                                                     aCTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGt                                                                                                                                           <  2:179816/150‑1 (MQ=255)           gTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTc                                                                                                                                 <  1:451347/150‑1 (MQ=255)                                            cttgATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATC‑AAAACCGGTGcc                                                                                               <  2:1399537/147‑1 (MQ=255)                                            cTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCCATACCCGGGCGGTGACCCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGGATCAACAACCGGTGc                                                                                                >  1:1633901/1‑150 (MQ=37)                                                 ttCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACAGGGCGGTGAACCGCTTAATCGAAGAAGATGGCTGGGGTACCTGGATTCGAACAAGGGAAATCCGGAATCAAAAACCGGTGCCATAc                                                                                           >  1:1388165/1‑150 (MQ=37)                                                         tcggAATGCCGGAATCATAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATg                                                                                                                                                   <  1:1270634/84‑1 (MQ=255)                                                         tcggAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATg                                                                                                                                                   >  2:1270634/3‑86 (MQ=18)                                                           gacgggattcgaacctgtgaccccatcattatgagtgatgtgctctaaccaactgagctacgtagccagattgtttcttcGATGGCTGGGGTACCTGGATTCGAACCAGGTAATGCACGTATCAAAAACCGGTGCATTACCGCTTGGCGa                                                                                 <  2:451347‑M1/70‑1 (MQ=255)                                                               ggattcgaacctgtgaccccatcattatgagtgatgtgctctaaccaactgagctacgtagccagattgtttcttcGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATAcc                                                                             >  2:1818533‑M1/77‑150 (MQ=255)                                                                   ggTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAAAAACCGGGCGGTGAACCGCTTACTCGAAGAAGATCGCTGGGGTACCTGGATTCGAACCAGGCAATGCCGGTATCAAAAACCGGGGCCTTACCGCTTGGCGATACCCCaa                                                                         >  1:1612075/1‑149 (MQ=255)                                                                        cAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCATTACCGCTTGGCGCTACCCCATCCGTa                                                                    >  1:1608346/1‑150 (MQ=255)                                                                         aaaaaCCGGTGCCTTACCGCTTGGCGATACCCCAAAAAGACGGCGGTTACCCGCTAAGTCTAAGAAGCGCGCGGCGGTACCTCGAATCCAAACAGGGACAGCCGCGATCAAATTCAGCTTCAATACCGATTGGCGCTACCCCATcaatac                                                                   >  2:1705671/1‑145 (MQ=255)                                                                         aaaaaCCGGTGCCTTACCGCTTGGCGATACCCCAAAAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACGCGGGAATGCCGGAATCAACAGCCGGTGCGTGACCGCTAGGCGATACCCCATCCGTAc                                                                   >  2:1734769/1‑150 (MQ=37)                                                                          aaaaCCGGTGCCTTACCGCTTGGCGATACCCCAATATCCGGGCGGTGAACCGCTTACTCGAAGAAGCTGGCTGGGGTACCTGGCTTCGAAACAGGGAATGCCGGTTTCAAAAACCGGTGCCTTACAGCTAGGCGATACCCCATCCGTACa                                                                  >  1:1317443/1‑150 (MQ=38)                                                                             gaccccatcattatgagtgatgtgctctaaccaactgagctacgtagccagattgtttcttcGATGGCTGGGGTACCTGGATTCGAACCAGGGACTGCCGGTATCAAAAACCGCTGCCTTACCGCTTGGCGATACCCCATACGAACAACg                                                               <  2:1094268‑M1/88‑1 (MQ=255)                                                                               cGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGACCCGCTTAGTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGGATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTAGAACGCt                                                             >  1:1573538/1‑150 (MQ=255)                                                                                 ccatcattatgagtgatgtgctctaaccaactgagctacgtagccagattgtttcttcGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAACCCGGTGCCTTACCGCTTGGCGATACCCCATACGGACAACgctga                                                           <  2:1226797‑M1/92‑3 (MQ=255)                                                                                     cTTACCGCTTGGCGATACCCCAATAAACGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCAATCCGTACAACGCTTTCTgg                                                       >  1:15333/1‑150 (MQ=255)                                                                                           ttctgttgtgatctaaataactgagctacgtagcgagattgtttcttcGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATg                                                 >  2:273757‑M1/49‑150 (MQ=255)                                                                                           gagtgatgtgctctaaccaactgagctacgtagccagattgtttcttcGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAACCAGACAACGCTTTCGCGtgaaag                                                 <  2:355282‑M1/102‑3 (MQ=255)                                                                                               gtcGATACCACAATAACCGGGCGGTGAACCGCTTACTCGTCGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGc                                             <  1:1236477/148‑1 (MQ=255)                                                                                                    tccctaaccaactgcgctacgtagcgagaattcttcttcGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAg                                        >  2:1415312‑M1/40‑150 (MQ=255)                                                                                                      ccccAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGc                                      >  2:1452770/1‑150 (MQ=255)                                                                                                       ctaaccaactgagctacgtagccagattgtttcttcGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCGTTACCGCTTGGCGATACCCCAAACGCACAACGCTTACTCGGGAATGGTGCGggagtcg                                     <  2:269431‑M1/114‑4 (MQ=255)                                                                                                        ccAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCga                                    >  2:137598/1‑150 (MQ=255)                                                                                                            aaactgcgcttcgtagcgagtatgtttcttcGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACt                                >  2:51253‑M1/32‑150 (MQ=255)                                                                                                                     tttgtagccattttgtttattaGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGc                       >  2:686324‑M1/23‑150 (MQ=255)                                                                                                                      gTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCGGGATTCGCACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGca                      >  1:1125034/1‑150 (MQ=255)                                                                                                                       tgtagcgagattgattatacGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGcac                     >  2:772690‑M1/21‑150 (MQ=255)                                                                                                                       agatccGCTTACTCGAAGATGATGCTTGGGGTACCTTGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGcac                     <  1:561340/146‑1 (MQ=25)                                                                                                                        gAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGcaca                    >  2:1358903/1‑150 (MQ=255)                                                                                                                        gAACCGCTCACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGcacc                    >  2:379300/1‑149 (MQ=255)                                                                                                                          aCCGCTTACTCGAAGTAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACAcc                  <  1:849574/150‑1 (MQ=255)                                                                                                                          aCCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGTGAAAGCCGGTATCATATACCGGTGCCTTACCGCTTGGCGATACCCCGTCCGTTCTTCGCTGGCTGGTGATTGGTGCGGGAGGCGAGACGTGAACTCGCACAcc                  >  2:867721/1‑150 (MQ=21)                                                                                                                          aCCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACAcc                  >  1:945205/1‑150 (MQ=255)                                                                                                                              cTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTgc              >  1:648663/1‑150 (MQ=255)                                                                                                                                  cTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATTCCCCCTCCGTACACCGCGGTCTGGGGTATGGTGCGGGCGGCGAGCCGGGCACTCGCCCCCCTTgcggcg          >  2:891215/1‑150 (MQ=18)                                                                                                                                    cGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGCCTTGAACTCGCACACCTTGCGGCGcc        >  2:1561678/1‑150 (MQ=255)                                                                                                                                     gaagaaGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTTAACTCGCACACCTTGCGGCGCCa       <  1:1452770/150‑1 (MQ=255)                                                                                                                                      tcttcGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATACGAACCCCGCTTTCTGGTGAAAGGTGCGGGACTCGAGACTTGAACTCGCAACCCTGgcggcgcaac      <  2:1720441‑M1/145‑4 (MQ=255)                                                                                                                                      aattcGATGGCTGGGGTAGCTGGATTCGAACCTGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAg      >  2:1227009‑M1/6‑150 (MQ=255)                                                                                                                                       agaagaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCTCACACCTTGCTGCGCCAGa     >  2:1705755/1‑150 (MQ=255)                                                                                                                                          cGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAAcc  >  1:1720441‑M1/2‑150 (MQ=255)                                                                                                                                           |                                                                                                                                                     ACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAACC  >  NC_000913/696725‑697011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.