Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,599,759 C→T 5.4% intergenic (‑101/+170) livJ ← / ← rpoH branched‑chain amino acid ABC transporter periplasmic binding protein/RNA polymerase, sigma 32 (sigma H) factor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,599,7590CT 5.4% 298.5 / 3.9 93intergenic (‑101/+170)livJ/rpoHbranched‑chain amino acid ABC transporter periplasmic binding protein/RNA polymerase, sigma 32 (sigma H) factor
Reads supporting (aligned to +/- strand):  ref base C (53/35);  new base T (3/2);  total (56/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01

GCCAGCGCGATACATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGT  >  NC_000913/3599612‑3599908
                                                                                                                                                   |                                                                                                                                                     
gCCAGCGCGATACATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATActc                                                                                                                                                     <  1:1615283/150‑1 (MQ=255)
 ccAGCGCGATACATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATActct                                                                                                                                                    >  1:650870/1‑150 (MQ=255)
 ccAGCGCGATACATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATActct                                                                                                                                                    <  2:356410/150‑1 (MQ=255)
 ccAGCGCGATACATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATActct                                                                                                                                                    <  2:1664408/150‑1 (MQ=255)
     cgcgATACATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTa                                                                                                                                                <  1:1696480/150‑1 (MQ=255)
        gATACATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGCGACTCCCCATTCTTCTGGGTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGAGTATGCTGCTaaag                                                                                                                                             <  2:994240/150‑2 (MQ=255)
        gATACATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTaaaa                                                                                                                                             <  1:551937/150‑1 (MQ=255)
        gATACATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTaaaa                                                                                                                                             >  1:385979/1‑150 (MQ=255)
         aTACATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAAc                                                                                                                                            >  2:860377/1‑150 (MQ=255)
         aTACAACCTGCCAGTAACGCAATACCCTTTCTGTTCATCCTGAGAATCCCCATTCTTCTGGATATTACGTGTGTTCTGATGTTGTTTTTCAGCACTTTATTTCGATTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAAc                                                                                                                                            <  1:361144/150‑1 (MQ=255)
            cATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATa                                                                                                                                         >  2:393574/1‑150 (MQ=255)
            cATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATa                                                                                                                                         >  1:1532301/1‑150 (MQ=255)
             aTCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGAGTATGCTGCTAAAGCacgg                                                                                                                                        <  1:1212303/150‑4 (MQ=255)
             aTCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGGTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATAc                                                                                                                                        >  2:138897/1‑150 (MQ=255)
                 tGCCAGAACCGCTTTACCCTTTATGTTCATCCTCAGAATCCCCATTCATCTGGTTATTACGTGTGTTGTGATGTTGTTTATCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCAGCTAAAACATACCCGa                                                                                                                                    >  2:1736360/1‑150 (MQ=255)
                    cAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGAttt                                                                                                                                 >  2:891431/1‑150 (MQ=255)
                       tAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTa                                                                                                                              <  2:1285258/150‑1 (MQ=255)
                        aaCGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTAt                                                                                                                             >  1:823211/1‑150 (MQ=255)
                               tACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTg                                                                                                                      <  1:1187970/150‑1 (MQ=255)
                                 cccTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGa                                                                                                                    <  2:1211883/150‑1 (MQ=255)
                                      tATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGc                                                                                                               >  1:403741/1‑150 (MQ=255)
                                      tATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGc                                                                                                               >  2:1345061/1‑150 (MQ=255)
                                        tGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTa                                                                                                             >  1:1541715/1‑150 (MQ=255)
                                         gTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTAt                                                                                                            >  1:516279/1‑150 (MQ=255)
                                         gTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTAt                                                                                                            >  1:636544/1‑150 (MQ=255)
                                         gTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTAt                                                                                                            >  2:526382/1‑150 (MQ=255)
                                              tacTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGa                                                                                                       >  1:11387/3‑150 (MQ=255)
                                               ccTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGAc                                                                                                      <  2:1532301/150‑1 (MQ=255)
                                               ccTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGGTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGAc                                                                                                      <  1:109420/150‑1 (MQ=255)
                                                cTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACa                                                                                                     >  2:158818/1‑150 (MQ=255)
                                                cTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACa                                                                                                     >  1:500467/1‑150 (MQ=255)
                                                cTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACACGATTTTTATGATATTGGAATAGCTATTTTGACa                                                                                                     >  1:759282/1‑150 (MQ=255)
                                                 tGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAg                                                                                                    >  2:134648/1‑150 (MQ=255)
                                                  gagaATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGt                                                                                                   >  2:1112972/1‑150 (MQ=255)
                                                    gaATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGttt                                                                                                 >  1:196399/1‑150 (MQ=255)
                                                     aaTCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTtta                                                                                                <  2:679417/150‑1 (MQ=255)
                                                     aaTCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTtta                                                                                                >  2:1774134/1‑150 (MQ=255)
                                                      aTCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTttat                                                                                               >  2:1642051/1‑150 (MQ=255)
                                                       tCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTttatt                                                                                              <  2:1187097/150‑1 (MQ=255)
                                                        ccccATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTttatta                                                                                             >  1:1052920/1‑150 (MQ=255)
                                                        ccccATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTttatta                                                                                             <  2:1513795/150‑1 (MQ=255)
                                                        ccccATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTttatta                                                                                             <  1:1032581/150‑1 (MQ=255)
                                                          ccATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAAc                                                                                           <  2:213775/150‑1 (MQ=255)
                                                                 tctGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGc                                                                                    >  1:626752/1‑150 (MQ=255)
                                                                     gTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTgg                                                                                <  2:650870/150‑1 (MQ=255)
                                                                      ttattaCGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTggg                                                                               <  2:1464932/150‑1 (MQ=255)
                                                                          taCGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGAtt                                                                           >  2:558438/1‑150 (MQ=255)
                                                                           aCGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTg                                                                          <  2:195285/150‑1 (MQ=255)
                                                                              tgtgtTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCg                                                                       <  2:295634/150‑1 (MQ=255)
                                                                                 gttgtGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGTCGttt                                                                    >  2:710355/1‑150 (MQ=255)
                                                                                 gttgtGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGttt                                                                    <  2:850182/150‑1 (MQ=255)
                                                                                 gttgtGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGttt                                                                    >  2:157409/1‑150 (MQ=255)
                                                                                   tgtgATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTg                                                                  <  2:636414/150‑1 (MQ=255)
                                                                                    gtgATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGc                                                                 >  1:85831/1‑150 (MQ=255)
                                                                                     tgATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGcc                                                                <  1:575281/150‑1 (MQ=255)
                                                                                        tgttgtTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGa                                                             >  1:1360544/1‑150 (MQ=255)
                                                                                        tgttgtTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGa                                                             >  1:1247238/1‑150 (MQ=255)
                                                                                         gttgttTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAg                                                            >  2:606146/1‑150 (MQ=255)
                                                                                         gttgttTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAg                                                            >  1:1143876/1‑150 (MQ=255)
                                                                                           tgttTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAggg                                                          <  1:1573698/150‑1 (MQ=255)
                                                                                           tgttTTACAGCACTTTATTTCGTTTTATGCATGACTACCCGGGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAggg                                                          <  2:226942/150‑1 (MQ=255)
                                                                                            gttTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCCTACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGGGGGGATTGGCGTTTTGCCGGAgggg                                                         <  2:558622/150‑1 (MQ=255)
                                                                                                 tCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAAtt                                                    >  1:862084/1‑150 (MQ=255)
                                                                                                 tCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGACGGAGGGGAAAtt                                                    >  1:1640527/1‑150 (MQ=255)
                                                                                                    ggaCTTTATTTAGTTTTATGCATGACTACCCGTTCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGTATTGGCGTTTTGCCGGAGGGGAAATTGat                                                 <  1:577616/148‑1 (MQ=255)
                                                                                                     cACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGatt                                                <  1:466975/150‑1 (MQ=255)
                                                                                                          tATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTAc                                           <  1:1716417/150‑1 (MQ=255)
                                                                                                             ttCGTTTTATGCATGTCTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACaga                                        >  1:1598870/1‑150 (MQ=255)
                                                                                                             ttCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACaga                                        >  1:1647352/1‑150 (MQ=255)
                                                                                                             ttCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACaga                                        >  2:1198342/1‑150 (MQ=255)
                                                                                                              tCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTCTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACagag                                       <  1:891431/150‑1 (MQ=255)
                                                                                                                gTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGc                                     >  2:849996/1‑150 (MQ=255)
                                                                                                                gTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTCATAAAACATACCCGATTTTTATCATATTGGAATAGCTATTTTGACAGTTTATTAACAATCAGCGTGGGGATTGGCGTTTTGCCGGAGTGGATAATGATTATAACACAGGc                                     >  2:139837/1‑150 (MQ=255)
                                                                                                                 ttttAGGCATGACTCACCGGGCTTTAGCAGCATACGCTGCTAAAACATACCCGATTTTGATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTTCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGcc                                    <  2:316108/150‑1 (MQ=255)
                                                                                                                  tttATGCCTGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGTAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGccc                                   <  2:1799721/150‑1 (MQ=255)
                                                                                                                   ttATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCa                                  <  2:673667/150‑1 (MQ=255)
                                                                                                                      tGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAATCATACCCGATATTTATGATATTGCAATAGCTATTTTGACAGTATATTAACAATCTGCGTGGGGATTGGAGTTTTGACTGAGGGGATATACATTTATACACAGTCCCaaaa                               >  1:287114/1‑150 (MQ=255)
                                                                                                                        cATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCaaaaaa                             >  1:812814/1‑150 (MQ=255)
                                                                                                                          tGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAaaaaaca                           <  2:186175/150‑1 (MQ=255)
                                                                                                                               aCCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAaaaaacaaaaac                      >  1:1667972/1‑150 (MQ=255)
                                                                                                                                cccGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAAcc                     >  2:568639/1‑150 (MQ=255)
                                                                                                                                cccGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGAATATTACAGAGGCACAAAAAACAAAAAcc                     >  2:289490/1‑150 (MQ=255)
                                                                                                                                    tgttttAGCAGAGTATGCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCgg                 >  1:1370590/4‑150 (MQ=255)
                                                                                                                                      ttttAGCAGAGTATGCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGAc               >  2:985026/2‑150 (MQ=255)
                                                                                                                                      ttttAGCAGAGTATGCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGAc               >  2:978654/2‑150 (MQ=255)
                                                                                                                                      cTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAATACAAAAACCCCGGAc               >  1:117543/1‑150 (MQ=255)
                                                                                                                                      cTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGGGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGAc               <  2:830975/150‑1 (MQ=255)
                                                                                                                                        ttAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGActc             >  1:564159/1‑150 (MQ=255)
                                                                                                                                        ttAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGActc             <  1:134648/150‑1 (MQ=255)
                                                                                                                                         ttgcagcaTACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGActct            >  2:748109/3‑150 (MQ=255)
                                                                                                                                         tAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGActct            <  1:885047/150‑1 (MQ=255)
                                                                                                                                           gcagcaTACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCa          >  1:1166413/1‑150 (MQ=255)
                                                                                                                                           gcagcaTACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGGTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCa          >  2:943956/1‑150 (MQ=255)
                                                                                                                                             agcaTACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATc        >  1:541314/1‑150 (MQ=255)
                                                                                                                                                 tACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAgg    >  1:1647916/1‑150 (MQ=255)
                                                                                                                                                  aCTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAggg   <  1:1112972/150‑1 (MQ=255)
                                                                                                                                                  aCTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAggg   >  2:723209/1‑150 (MQ=255)
                                                                                                                                                   ctctGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGt  <  1:1345061/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
GCCAGCGCGATACATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACATACCCGATTTTTATGATATTGGAATAGCTATTTTGACAGTTTATTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGT  >  NC_000913/3599612‑3599908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑