BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1287084	110 (0.440)	8 (0.040)	6/238	NT	7.0%	noncoding (153/171 nt)	rttR	rtT sRNA, processed from tyrT transcript
*	?	NC_000913	1287557 =	120 (0.560)	8 (0.040)	6/238	NT	7.0%	noncoding (66/85 nt)	tyrT	tRNA‑Tyr

Only 100 of 162 total aligned reads displayed.

GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGAC  >  NC_000913/1286935‑1287231

gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGATCCGAACCTTATTAGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTTCGGATTCGCTTGAGATTTAATGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATT                                                                                                                                                      >  2:2007112‑M1/1‑150 (MQ=255)

gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATT                                                                                                                                                      >  2:1693905‑M1/1‑150 (MQ=255)

 tcgtcgCCCGCGGCAACGCCCTCTCGCTGCCGCTCGAGCCGAACCTTAGTCGCAGCTTCTCATCCTCCCCCGCCTGGGCAGACTCTCTGATTGCGGATTCGCTTGAGAGTTCCGGGACTTTTGCAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                     <  2:2837611/150‑1 (MQ=14)

    ttGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCTCATTAGCTGGAGAGTTAAGGGGCGTTTGACAAAGCAGGGGGTGGGGGGCGGATTACTc                                                                                                                                                  >  1:3307431/1‑150 (MQ=14)

    ttGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTGGAGAGTTCAGGGACGATTGAAAGTGATGGTGGTGGGGGAAGGATTACTc                                                                                                                                                  >  1:3051918/1‑150 (MQ=255)

     tGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCa                                                                                                                                                 <  1:3785756/150‑1 (MQ=255)

        cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACGTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCaccc                                                                                                                                              >  1:2775535/1‑147 (MQ=255)

         tGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAcaaacatc                                                                                                                                             >  2:2393130/1‑143 (MQ=255)

         tGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAgcgc                                                                                                                                             >  2:1440245/1‑150 (MQ=255)

         tGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTGGATAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAccgc                                                                                                                                             >  2:2393123/1‑150 (MQ=255)

            ggCAACGCTCTCTCGCTGACGCTCGAGCCGATCATTTGTCGTATCTTCTGATCCGTCCCGTGATGGGCAGAATATTTGATTGGGGATTCGCTTGAGTTTTCTTGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgc                                                                                                                                          <  1:3590167/150‑1 (MQ=14)

             gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCTTGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcg                                                                                                                                         <  2:434576/150‑1 (MQ=255)

               aaCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGCGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCTCTgcgcg                                                                                                                                       >  2:3273169/1‑150 (MQ=255)

               aaCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcgcg                                                                                                                                       <  1:1024296/150‑1 (MQ=255)

                    tctctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCg                                                                                                                                  >  2:1253920/1‑150 (MQ=255)

                    tctctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGAGCTTCg                                                                                                                                  >  2:49967/1‑150 (MQ=255)

                                gCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAGATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCACCGCGGCGCCCTTCGCCCCACGGGTCg                                                                                                                      >  2:915022/1‑150 (MQ=17)

                                       ccGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTg                                                                                                               >  2:3086325/1‑150 (MQ=255)

                                          aaCCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCgg                                                                                                            >  1:2622713/1‑150 (MQ=255)

                                             cTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGGGGcta                                                                                                         >  2:3084637/1‑148 (MQ=255)

                                              tttgtcgAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGTTTGTTAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctcccttt                                                                                                        <  1:3268756‑M1/147‑47 (MQ=255)

                                                 gTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGct                                                                                                     <  1:128796/150‑1 (MQ=255)

                                                 gTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAAGct                                                                                                     >  1:2176663/1‑150 (MQ=255)

                                                       gCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCTCCCTTCGGGTAGATTCATGAGGCAACGCACTCTCg                                                                                               >  1:3766980/1‑150 (MQ=14)

                                                       gCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGAGCTTCGCCCTTCGTGTCGTTTCCTGCGGCAAAGCGCTCTCg                                                                                               >  2:1610663/1‑150 (MQ=14)

                                                         ttCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTACAGGGACGTTTGAAAGAGATGGAGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGACGTTGCCTGAGGCAACGctctctagat                                                                                             >  2:2854997/1‑146 (MQ=14)

                                                           ctcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTgg                                                                                           >  1:2965242/1‑150 (MQ=255)

                                                            tcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCGACGCTCTCTCGCTGgc                                                                                          >  1:2569534/1‑150 (MQ=255)

                                                                 cTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTATTCTTCTCTTCGCTCATCACCCTTCGGGACGTTGCCTGTGGCAACGATCTCTCGATTTCGCTCg                                                                                     >  2:3161439/1‑150 (MQ=14)

                                                                  ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCATCGCCCTTCGGGTCGTTGCCTGAGGCAACGCACTCTCGCTGGCGCACGa                                                                                    >  1:3571398/1‑150 (MQ=255)

                                                                  gtCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGa                                                                                    <  2:2642699/149‑1 (MQ=255)

                                                                      ccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCATGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCg                                                                                >  2:715389/1‑150 (MQ=255)

                                                                          atcggCATAATAAATGATAGCGGATTATCTTGAGAGTTCAGTGACTATTGAAAGTGATCCTGGTGCTCGAACGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAAcc                                                                            <  1:587275/147‑1 (MQ=14)

                                                                          aTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACCCACACAACCGCGCGCTCGACTCGAAcc                                                                            >  1:141624/1‑150 (MQ=14)

                                                                            gggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACTCTCGCTGGCGCACGAGTCGAAccat                                                                          >  1:292603/1‑148 (MQ=255)

                                                                                 gAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCg                                                                     >  2:1507355/1‑150 (MQ=255)

                                                                                   atatTTGATTGCGGATTCGTTTGAGAGTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGaa                                                                   <  2:2463916/150‑1 (MQ=255)

                                                                                           ttGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCACGAGTCGAACCTTGGTAGAAGCATcaca                                                           >  2:609610/1‑150 (MQ=255)

                                                                                           ttGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCACGAGACGAACCGTGGTCGAAGCTTCTCa                                                           >  2:3072867/1‑150 (MQ=255)

                                                                                           ttGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCCACGCGCACACGCGGGCGCACGCGTCGTACCATGGGCGCAGCGTCTCa                                                           >  1:864602/1‑150 (MQ=14)

                                                                                           ttGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACACAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGAGAAAGCTGGCGCACGAGTCGCACCCTGGTCGAACCATCTCa                                                           >  1:2055436/1‑150 (MQ=14)

                                                                                           ttGCGGATTCGATTGAGATTTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCa                                                           <  2:1445038/150‑1 (MQ=255)

                                                                                            tGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGGCGGACCATGGTCGAAGCTTCTCaa                                                          >  2:137548/1‑149 (MQ=255)

                                                                                            tGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCAATCGCAGGCGCGCCAGTCGAACCATGGTAGAAGCTTCTCAt                                                          >  1:155105/1‑150 (MQ=14)

                                                                                             gCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCAACGCACACACGCAGGCGCTCGACTCGAAACAAGGTCGAAGCATatcatc                                                         >  1:257052/1‑150 (MQ=14)

                                                                                              cGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATcc                                                        >  2:4146846/1‑150 (MQ=255)

                                                                                              cGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCATCGCCCTTCGGGTCGTTGCCAGCGGCAACCCACTCGCGCACGCCCGCCAGGCCAACCATGGTCCAAGCATCACAAcc                                                        >  1:2180035/1‑150 (MQ=14)

                                                                                               ggATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑t                                                      >  2:1744050/1‑150 (MQ=255)

                                                                                               ggATTCGCGTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACCCTAACTCGCTGGCGCACGAGTCGCACCCAGGTCGAAGCGTCTCAtaca                                                       >  1:1392190/1‑147 (MQ=14)

                                                                                                 tttCACTTGAGAGTTCTGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTc                                                    <  2:1955059/149‑1 (MQ=255)

                                                                                                  ttCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTcc                                                   <  1:1693905/150‑1 (MQ=255)

                                                                                                  ttCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACACAGCGCTGCGCGCTTCGCCCTACGGGTCGTTTCCTGACGCGACGATCTCTCGCTGGCGCTAGAGTCGAACATTGGTCGAAGCTTCTCATCC‑TTcc                                                   >  2:3823533/1‑150 (MQ=14)

                                                                                                     gCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCAGAGGCAACAATATCTCGCATGCGCTCCAAACCAACCTTAGTCCAATCTACTAAACC‑TTccccc                                                >  2:2251613/1‑149 (MQ=11)

                                                                                                      gttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGGGTGGGGGAAAGCTATATAGGTGGCGCTGGAGTGGTAGCTTGGTGGTAGCTTCTGATAC‑TTTCCGGc                                               >  1:438956/2‑150 (MQ=9)

                                                                                                      cTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGGCTGCGGCAAAGCTCTCTCGCTGGCGCTCGGGTCGTACCTTGGTGGAAGCTTCTAATAC‑TTACCCGc                                               >  1:438677/1‑150 (MQ=14)

                                                                                                      cTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATAACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCAACCCGCACTCCCTGGCCCTCGAGTCGAACAGGTGTCGAAGCGTCTAATCC‑TTcacccc                                               >  1:368581/1‑148 (MQ=14)

                                                                                                       ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGGCGGCGGCAACGCACTAACCCTGGCGCTCGCGTGGAACCAGGGTGGAATATTATCATGC‑TTCCCCGcg                                              >  2:1086230/1‑149 (MQ=14)

                                                                                                       ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCACTTCGGGTCGTTTCCGGCGGCAACGCTCGCTCGCTGGCGCTCGAGTCGAACCGGGGTCGAAGCTTCTCATCC‑TTGCCCGCa                                              >  2:1435252/1‑150 (MQ=14)

                                                                                                       ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGAGCTTCGCCCGTCGGGACGTTGCCGGACGCCACGCGCGCGCGCTGGCGCGCGAGTGGAACCGTGGTCGAATCATCTAATAC‑ATCCCCGCa                                              >  2:1086128/1‑150 (MQ=14)

                                                                                                             gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggaaatcctatttactggcctgctcccatatcgggaagc                                         >  2:2618416‑M1/1‑41 (MQ=255)

                                                                                                             gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCa                                        <  1:4146846/150‑1 (MQ=255)

                                                                                                               tCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctccc                                                     <  1:1060954‑M1/136‑98 (MQ=255)

                                                                                                                 aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGACGTTGCCTGCGGCAACGCTCACTCGCTGGCGCTCGAGTCGAACCTTGGGCGAAGCTTAAAATAC‑ATCCCCCCAAGGGCCGaaa                                    >  1:2631620/1‑149 (MQ=14)

                                                                                                                  gggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTGGCCGGCGGCAACGCACACACGCAGGCGCACCAGACGAAACATGGTCCAAACGTAACATCCATACCCCCCAT‑GGCAGaaaa                                   >  1:2032628/1‑148 (MQ=2)

                                                                                                                   ggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTAAGCGCTGCGCGCTTCGCCCTTCGGTTCGTTTCCTGACGCAAAGCTCTCTCGCTTGCCCAACAATAGAAAAATGGTAGTAACATCTCATAC‑TTCCCCGCATGGGCAGAatat                                  >  2:739830/1‑150 (MQ=9)

                                                                                                                    gACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACTCTCGCTGGCGCGCGAGTCGAACCTTGGTCGAAGCATCTCATCC‑TTACCCGCATGGGCAGCATAtt                                 >  2:2026697/1‑150 (MQ=11)

                                                                                                                     aCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcc                                                      <  2:3891057‑M1/129‑97 (MQ=255)

                                                                                                                     aCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcc                                                      >  1:3891057‑M1/1‑33 (MQ=255)

                                                                                                                       ttgtGACAGTGATGGTGGTGGGGGACGGATGACTCAGCGCTGCGCGCTTCGCCCTGCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCACTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCAGAATATTTaa                              <  2:3051918/147‑1 (MQ=11)

                                                                                                                       gtgggccaGTGAGGGTGGGGGGGGACGGGTGACTCTGGGCGGCGCGGTTGGGCGTCCGGGTGGTTGCCTGCGGCAACGCTCTCTCGCTGGCCCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCAGAATATTTaa                              <  2:3051959/143‑1 (MQ=11)

                                                                                                                        tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTAAACC‑TTCCCCGCAGGGGGCGAAGATTTata                             >  2:3644484/1‑148 (MQ=11)

                                                                                                                           gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCAGAATATTTAATTGc                          <  2:2965242/150‑1 (MQ=39)

                                                                                                                            tctgggctggtggtggGGGAAGGTTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCAGAATATTTAATTGCg                         <  1:3984290/143‑1 (MQ=255)

                                                                                                                            aaaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCAGAATATTTAATTGCg                         <  2:2773748/150‑1 (MQ=39)

                                                                                                                            aaaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCAGAATATTTAATTGCg                         >  2:2090607/1‑150 (MQ=39)

                                                                                                                              aGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaa                        >  2:2192878‑M1/1‑24 (MQ=255)

                                                                                                                               ttgATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaa                       <  1:2618416‑M1/149‑128 (MQ=255)

                                                                                                                                 gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCACCGCATgg                                           <  1:2297053/127‑1 (MQ=25)

                                                                                                                                     gtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgc                 >  2:388407‑M1/1‑17 (MQ=255)

                                                                                                                                      tggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcg                >  1:3594054‑M1/1‑16 (MQ=255)

                                                                                                                                        gtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCAGAatat                                  <  1:3390635/129‑1 (MQ=35)

                                                                                                                                        gtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCAGAatat                                  >  2:3390635/1‑129 (MQ=35)

                                                                                                                                        gtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa             <  1:3107788/150‑1 (MQ=40)

                                                                                                                                          gggggAAGGATTcgaaccttcgaagtcgttgagggcatatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgc            <  1:3023841‑M1/150‑139 (MQ=255)

                                                                                                                                           ggggAAGGATTACTCAGCGCTACGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTACCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGt          >  2:2757456/1‑150 (MQ=255)

                                                                                                                                            gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggcctctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgcagctg          >  2:1220319‑M1/1‑10 (MQ=255)

                                                                                                                                            gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctg          >  2:1487184‑M1/1‑10 (MQ=255)

                                                                                                                                             ggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgt         <  2:1187273‑M1/150‑142 (MQ=255)

                                                                                                                                             ggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgt         >  2:4063876‑M1/1‑9 (MQ=255)

                                                                                                                                              gAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttt                                                                    <  1:132576‑M1/90‑83 (MQ=255)

                                                                                                                                               aaGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaa       >  1:1950550‑M1/1‑7 (MQ=255)

                                                                                                                                                aGGATTcgaaccttcgaagtcgatgacggcagatttacagtcttctccct                                                                                                          >  1:3504164‑M1/1‑6 (MQ=255)

                                                                                                                                                aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaa      <  1:759571‑M1/150‑145 (MQ=255)

                                                                                                                                                aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaa      <  1:759818‑M1/150‑145 (MQ=255)

                                                                                                                                                aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccct                                                                                                          <  2:3504164‑M1/50‑45 (MQ=255)

                                                                                                                                                 ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg    <  1:1225289/150‑1 (MQ=255)

                                                                                                                                                  gATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagt    <  2:3740858‑M1/150‑147 (MQ=255)

                                                                                                                                                  gATTagaaactacgaagtcgatgacggcagatttacagactgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttaacgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagt    <  2:1367038‑M1/150‑147 (MQ=255)

                                                                                                                                                    ttcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtgt  <  1:968652‑M1/150‑149 (MQ=255)

                                                                                                                                                    ttcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtgt  >  2:104146‑M1/1‑2 (MQ=255)

GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCC‑TTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGAC  >  NC_000913/1286935‑1287231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.