mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 55 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4621634 = | 293 (1.160) | 3 (0.010) | 3/258 | NT | 1.1% | intergenic (+32/‑135) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase |
| ? | NC_000913 | 4621662 = | 258 (1.100) | intergenic (+60/‑107) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase | |||||
| * | ? | NC_000913 | = 4583137 | 223 (0.890) | 10 (0.040) | 7/266 | NT | 4.3% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 235 (0.980) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4534139 | 295 (1.170) | 8 (0.030) | 6/258 | NT | 2.8% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 283 (1.210) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4325906 = | 232 (0.920) | 5 (0.020) | 5/264 | NT | 2.4% | noncoding (105/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 4326238 = | 185 (0.770) | noncoding (437/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | 4321620 = | 294 (1.170) | 6 (0.030) | 3/264 | NT | 2.1% | coding (77/453 nt) | phnG | ribophosphonate triphosphate synthase subunit |
| ? | NC_000913 | 4321659 = | 275 (1.150) | coding (38/453 nt) | phnG | ribophosphonate triphosphate synthase subunit | |||||
| * | ? | NC_000913 | = 4171803 | 209 (0.830) | 5 (0.020) | 4/274 | NT | 2.2% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213162 | 249 (1.000) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 4168341 | 154 (0.610) | 6 (0.030) | 3/258 | NT | 4.4% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 116 (0.500) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4126074 | 272 (1.080) | 3 (0.010) | 3/254 | NT | 1.1% | coding (737/2199 nt) | priA | Primosome factor n' (replication factor Y) |
| ? | NC_000913 | 4126396 = | 299 (1.300) | coding (415/2199 nt) | priA | Primosome factor n' (replication factor Y) | |||||
| * | ? | NC_000913 | = 4094350 | 313 (1.240) | 8 (0.050) | 8/196 | NT | 3.0% | noncoding (35/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094719 = | 291 (1.640) | intergenic (‑447/+4) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | = 4093097 | 227 (0.900) | 6 (0.020) | 5/266 | NT | 2.7% | intergenic (‑274/+27) | frvA/rhaM | putative enzyme IIA component of PTS/L‑rhamnose mutarotase |
| ? | NC_000913 | = 4093109 | 214 (0.890) | intergenic (‑286/+15) | frvA/rhaM | putative enzyme IIA component of PTS/L‑rhamnose mutarotase | |||||