BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1287084	103 (0.360)	11 (0.050)	8/238	NT	7.9%	noncoding (153/171 nt)	rttR	rtT sRNA, processed from tyrT transcript
*	?	NC_000913	1287557 =	170 (0.700)	11 (0.050)	8/238	NT	7.9%	noncoding (66/85 nt)	tyrT	tRNA‑Tyr

Only 100 of 156 total aligned reads displayed.

GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTT  >  NC_000913/1286935‑1287233

gacGTTGCCTGCGTCAACGCCCCCGCCCCGACGCCCGAGCCGCACCTCCCCCGAAGACCGTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                       <  2:1168661/148‑1 (MQ=14)

 tCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                      <  2:2239440/150‑1 (MQ=255)

 tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                      <  1:1902187/150‑1 (MQ=255)

    ttGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACta                                                                                                                                                   >  1:3046064/1‑149 (MQ=255)

    ttGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATACTTACCCCCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGGGGTGGGGGTAGGTTTACTc                                                                                                                                                   >  1:1265465/1‑150 (MQ=17)

        cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcctcaccg                                                                                                                                               >  2:4011380‑M1/1‑142 (MQ=255)

        cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGGGAGTTCAGGGACTTTTGAAAGTGATGGGGGTGGGGGAAGGATTAATCAgcg                                                                                                                                               >  1:2991344/1‑150 (MQ=255)

        cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAgcg                                                                                                                                               <  1:3856095/150‑1 (MQ=255)

                  gCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCGTCTCATCCTTCCCCGCCTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCtt                                                                                                                                     <  1:1887917/150‑1 (MQ=255)

                   ctctctCGCTGTCGCTCGAGCCTAACCTTAGTCGAATCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGTATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc                                                                                                                                    <  2:3879419/150‑1 (MQ=17)

                   ctctctCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc                                                                                                                                    <  2:1360499/150‑1 (MQ=255)

                        tcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCt                                                                                                                               >  1:4393375/1‑150 (MQ=255)

                          gCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTc                                                                                                                             >  1:2522252/1‑150 (MQ=255)

                           cTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCg                                                                                                                            <  1:811748/150‑1 (MQ=255)

                              aCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCTCTGAGAGCTTCGCCCATCgtgt                                                                                                                         >  1:4555859/1‑150 (MQ=17)

                              aCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCggga                                                                                                                         >  2:1948967/1‑149 (MQ=255)

                                             cTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCaa                                                                                                          >  1:3958876/1‑150 (MQ=255)

                                             cTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCaa                                                                                                          <  1:2615902/150‑1 (MQ=255)

                                             cTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCaa                                                                                                          >  2:2577941/1‑150 (MQ=255)

                                              tttttCGTAGCTTCTCATCCTTCCCCGCATTGGCAGTTTTTTTTATTGGGGATTCGATTGAGATTTGTTGGACTTTTGTATGTGTTGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCGCTTCGGGTCGTTGCCTGCGGCatc                                                                                                         <  1:3738004/146‑3 (MQ=11)

                                                    gAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCGTGCGGCAACGcaata                                                                                                   >  2:4051532/1‑146 (MQ=255)

                                                      aGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAGTCCGCGCTTCGCGCATCACCCTTCGGGACGTGGCCTGGGGCAACGGactctc                                                                                                 >  2:4585693/1‑150 (MQ=14)

                                                         ttCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCt                                                                                              >  2:3470475/1‑150 (MQ=255)

                                                          tctcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCATCGGGTCGTTGCCGGCGGCAAAGCACACTAGCTg                                                                                             >  1:2945059/1‑150 (MQ=14)

                                                               tCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGATTGGGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCTCCATACGGCTCGAGGCCGTCGGCAGCGCTCACTCGCTGgcgcg                                                                                        >  1:1351075/1‑149 (MQ=11)

                                                                  ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGa                                                                                     >  1:777055/1‑150 (MQ=255)

                                                                  ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCAACGCTCTCTCGCTTGCGCTCGa                                                                                     >  2:811037/1‑150 (MQ=255)

                                                                  ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGGCGCTCGa                                                                                     >  2:3315320/1‑150 (MQ=255)

                                                                  ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCGCTCTCGCTGGCGCTCgc                                                                                     >  2:3315261/1‑149 (MQ=255)

                                                                  ttCCCCGCAAGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGTGGAAGGATTAATCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCAACGATCTCTCGCTTCCGCTCGa                                                                                     >  2:3664668/1‑150 (MQ=14)

                                                                     cccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGGGGCAACGCTCTCACGCAGGCGCACGAGTc                                                                                  >  1:1647384/1‑150 (MQ=255)

                                                                     cccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGTCGCTCGAGTc                                                                                  >  1:2119371/1‑150 (MQ=255)

                                                                      ccGCATGGGCAGAATATTTGATTGCGGATTCGGTTGAGAATTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCg                                                                                 >  2:2957565/1‑150 (MQ=255)

                                                                      ccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCATGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCACGAGTCg                                                                                 >  2:4628988/1‑150 (MQ=255)

                                                                       cgctggggCAGAATATTTGATTGCGGAGTCGCTTGAGCGGTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGa                                                                                <  2:4326711/145‑1 (MQ=255)

                                                                       cGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCTCACGCTGGCGCACGAGTCGa                                                                                >  1:3983581/1‑150 (MQ=255)

                                                                        gCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGGCGCGCGAGTCGaa                                                                               >  1:4790791/1‑150 (MQ=255)

                                                                        ccATGTGCTGAATTTCTGTTTGCTGTTTCGATCTAGACTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGaa                                                                               <  2:1303360/149‑1 (MQ=11)

                                                                            gggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCtt                                                                           <  1:2728734/150‑1 (MQ=12)

                                                                            gggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCtt                                                                           <  1:3289499/150‑1 (MQ=255)

                                                                                aGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCAACGCTCTCTCGCTTTCGCTCGAGTCGAACCTTTGTc                                                                       >  2:4798911/1‑150 (MQ=255)

                                                                                   atatTTGCTTGCGGAGTCGCTTGAGAGTTCTGGGTCTTTTGAATGTGATGGTGGTGGGGGAATGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGaa                                                                    <  1:1134395/150‑1 (MQ=14)

                                                                                    tatTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTAGCTGGCGCTCGAGTAGAACCGAGGTCGAAg                                                                   >  1:2378650/1‑150 (MQ=255)

                                                                                        tttttgcgGATTCGTGTGGAAGTTCAGGGCCTTTTGATAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactgg                                                               <  2:4118983‑M1/147‑89 (MQ=255)

                                                                                           ttGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCACAAGCAGGCGCTCGAGTCGAAACTTGGTCGAAGCATATCa                                                            >  1:107015/1‑150 (MQ=14)

                                                                                              cGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATcc                                                         <  1:3781505/150‑1 (MQ=255)

                                                                                              cGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAAcc                                                         >  2:4199560/1‑150 (MQ=255)

                                                                                                     gCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGACTCGAACCATGGTCGAAGCTTCTCAAGCTTCCCCg                                                  >  2:3262047/1‑150 (MQ=255)

                                                                                                      ttgggaagttcaggGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatc                                                 >  2:3782691‑M1/7‑48 (MQ=255)

                                                                                                       ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAAGCGCTCTCGCGGGCGCGCGAGTCCAACCATGGTCGAAGCTTCTCATCCATCCCCGCa                                                >  2:1656335/1‑150 (MQ=14)

                                                                                                         gagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCTCATCCCCCTTCGGGCCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAATCGAACCTTCGTCGAAGCTTCTCAACCTTCCCCGCagc                                              >  2:3933897/1‑148 (MQ=14)

                                                                                                         gagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCGGCCGCAACCCACGCACGCTGGCGCACCAATCGAACCTTGGTCGAAGCGACACAACCTTCCCCGCaag                                              >  2:2288717/1‑148 (MQ=14)

                                                                                                         gagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATg                                              >  2:1179389/1‑150 (MQ=255)

                                                                                                         gagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATg                                              >  2:4661772/1‑150 (MQ=255)

                                                                                                         gagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATg                                              >  2:1591780/1‑150 (MQ=255)

                                                                                                                 aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCACGCTGGCGCTCGAGTCGAACCATGGTCGAAGCTTCTCATACTTCCCCCCATGGGCAGAat                                      >  2:2693835/1‑150 (MQ=255)

                                                                                                                  gggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTAGAACCGTGGTCGAAGCTTCTAAACCGTCCCCGCAAGGGGAGaaaa                                     >  1:2540877/1‑148 (MQ=14)

                                                                                                                   ggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACACACCGCTCCGCCCATCGCCCAACCGGTCCTTGCCTCACCCAACGCACGCTCGCTCACCCCCCCATCGAACCTAGCTCGAACCATCTCCTCCTACCCCCCCAGGGCAgcagaa                                    >  2:2870797/1‑145 (MQ=2)

                                                                                                                   ggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACAAAGATCTGCGCGCTTCGCCCAACGGTTCCTTGCATCACCCAAAGCACTCTCGCTGGCGCACGAGTCGAAACTAGATCGGAACATCTAATACAACCCCGCCAGGGCAgcagaa                                    >  2:3726049/1‑145 (MQ=2)

                                                                                                                     aCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgca                                  <  2:629627‑M1/150‑118 (MQ=255)

                                                                                                                       ttttGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatg                                                                          <  2:4374653‑M1/108‑78 (MQ=255)

                                                                                                                       ttttGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggaaatg                                                                          >  1:4374653‑M1/1‑31 (MQ=255)

                                                                                                                       ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTTCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTATAAAACGTCCCCCCAAGGGCCGAAGATTTaa                                >  1:2547555/1‑150 (MQ=11)

                                                                                                                       ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTaa                                <  2:1380366/150‑1 (MQ=38)

                                                                                                                       ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTaa                                <  2:3605840/150‑1 (MQ=38)

                                                                                                                       ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAAATTTaa                                >  2:1189733/1‑150 (MQ=38)

                                                                                                                        tttGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgct                                                         <  1:3463506‑M1/124‑95 (MQ=255)

                                                                                                                          ggtgaaagatggtggTGGTGGAAGGATTcgaaccttcgaactcgctgacggcagatttacagtctgctccccttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcata                             <  2:1019114‑M1/143‑123 (MQ=255)

                                                                                                                           gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGc                            <  1:971405/150‑1 (MQ=39)

                                                                                                                           gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGc                            <  1:335415/150‑1 (MQ=39)

                                                                                                                           gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCATCCCCGCATGGGCAGAATATTTAATTGc                            >  2:520201/1‑150 (MQ=255)

                                                                                                                            aaaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTTGCGCTCGAGTCGAACCATGGTCGAAGCTACTCATCCTTCCCCGCATGGGCAGAATAATTaaattcg                           >  2:1218805/1‑145 (MQ=11)

                                                                                                                            aaaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCg                           <  1:1179389/150‑1 (MQ=39)

                                                                                                                            aaaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAAGCACTCACGCTGGCGCGCGAGTCGAAACATTGTCGAAGCATCTAAACCATCCCCCCATGGGGAGAATAttttaattcg                           >  1:2340181/1‑143 (MQ=11)

                                                                                                                            aaaGTGATGGTGGTGGGGGAAGGATGACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCg                           <  1:1591780/150‑1 (MQ=255)

                                                                                                                                tGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcct                                                            >  2:4302888‑M1/1‑22 (MQ=255)

                                                                                                                                tGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcct                                                            <  1:4302888‑M1/113‑92 (MQ=255)

                                                                                                                                 gATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactgg                                                               >  2:3397466‑M1/1‑21 (MQ=255)

                                                                                                                                 gATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactgg                                                               <  1:3397466‑M1/109‑89 (MQ=255)

                                                                                                                                   tggtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCTCTCGCTGGCGCGCGAGTCGAAACTTGGTCGAAGCTTCTCAACCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCgg                    >  2:1131686/1‑149 (MQ=255)

                                                                                                                                     gtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgc                  <  2:452444‑M1/150‑134 (MQ=255)

                                                                                                                                     gtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTg                  <  1:431628/150‑1 (MQ=38)

                                                                                                                                      tggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcg                 >  2:615862‑M1/1‑16 (MQ=255)

                                                                                                                                            gggAAGGATTcgaaccttcgatgtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctg           <  1:2092951‑M1/150‑141 (MQ=255)

                                                                                                                                            gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctg           <  1:594246‑M1/150‑141 (MQ=255)

                                                                                                                                            gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctg           <  1:4474988‑M1/150‑141 (MQ=255)

                                                                                                                                              gacggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCa         <  1:381029/147‑1 (MQ=255)

                                                                                                                                              gAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCa         <  1:2804620/150‑1 (MQ=255)

                                                                                                                                              gAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCa         >  2:2662114/1‑150 (MQ=255)

                                                                                                                                              gAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCACGCTGGCGCTCCAGTCGAACCATGGTCGAATCTTCTAAAACATACCCCCATGGGCCGAATATTTAATTGCGGATTCGTTTGGGAGTTCa         >  2:34811/1‑150 (MQ=11)

                                                                                                                                               aaGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGCCGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAAATTTAATTGCGGATTCGGTGGGAAGTTCAg        >  2:361506/1‑150 (MQ=11)

                                                                                                                                                aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaa       <  1:1914345‑M1/150‑145 (MQ=255)

                                                                                                                                                 ggATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaag      >  1:2345625‑M1/1‑5 (MQ=255)

                                                                                                                                                 ggATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaag      >  1:4362677‑M1/1‑5 (MQ=255)

                                                                                                                                                  gATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttgtcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagt     >  1:1732352‑M1/1‑4 (MQ=255)

                                                                                                                                                  gATTcgaaccttcgaagtcgatgacggcagatttacagtctgctcccttt                                                                                                         >  2:2870958‑M1/1‑4 (MQ=255)

                                                                                                                                                  gATTcgaaccttcgaagtcgatgacggcagatttacagtctgctcccttt                                                                                                         <  1:3646004‑M1/50‑47 (MQ=255)

                                                                                                                                                   aTTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtg    >  1:1793734‑M1/1‑3 (MQ=255)

                                                                                                                                                     tcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtgtt  >  2:1877928‑M1/1‑1 (MQ=255)

                                                                                                                                                     tcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtgtt  >  1:1008340‑M1/1‑1 (MQ=255)

GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTT  >  NC_000913/1286935‑1287233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.