| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 175,144 | Δ1 bp | 6.9% | coding (38/1422 nt) | clcA → | H(+)/Cl(‑) exchange transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 175,144 | 0 | C | . | 6.9% | 392.2 / 23.5 | 131 | coding (38/1422 nt) | clcA | H(+)/Cl(‑) exchange transporter |
| Reads supporting (aligned to +/- strand): ref base C (58/63); new base . (5/4); total (63/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.98e-02 | |||||||||||
Only 100 of 133 total aligned reads displayed.
GTATAAAAGTTTTGTGCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGCCTGGTTGCAGAACC > NC_000913/174999‑175293 | gTATAAAAGTTTTGTGCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCcgcc > 2:723120/1‑149 (MQ=255)gTATAAAAGTTTTGTGCATTTGAAACATTACGCTTTGCAAAGGATTATCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCcgcg < 1:255439/150‑1 (MQ=255) tataAAAGTTTTGTGCATTTGAAACATTACGCTTTGCAACGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCcgcgc < 2:657060/150‑1 (MQ=255) taAAAGTTTTGTGCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCgcgc‑gc > 2:412768/1‑150 (MQ=255) aaaaGTTTTGTGCATTTAAAACATTACGCTTTGCAAAGGATTTTCATGGAAAGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACGAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑Gcc < 2:545177/150‑1 (MQ=255) aaaGTTTTGTGCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCt > 2:1165179/1‑150 (MQ=255) aGTTTTGTGCATTTGAAACATTACGCGTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGc < 2:1533943/150‑1 (MQ=255) gTTTTGTGCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCg > 1:1282399/1‑150 (MQ=255) ttttGTGCATTTGAAACAATACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGG‑CGCGCGGCCTGCgg < 2:1510468/150‑2 (MQ=255) tttGTGCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGAc < 1:703264/150‑1 (MQ=255) tttGTGCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGG‑CGCGCGGCCTGCggt < 2:956576/150‑3 (MQ=255) ttGTGCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGG‑CGCGCGGCCTGCggtg < 2:982275/150‑4 (MQ=255) gtgCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCATGCCGCGC‑GCCTGCGACGCa > 1:349259/1‑150 (MQ=255) gtgCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCa < 2:1282399/150‑1 (MQ=255) gtgCATTTGAAACATTACGCTTGGCAAAGGATTATCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCa < 2:470506/150‑1 (MQ=255) tgaaTTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAg < 2:741913/147‑1 (MQ=255) tgCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGTAg > 1:1711512/1‑150 (MQ=255) tgCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAg > 2:853817/1‑150 (MQ=255) cATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGAc > 1:1847754/1‑150 (MQ=255) cATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGAc < 1:855647/150‑1 (MQ=255) cATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGAc > 1:1301329/1‑150 (MQ=255) cATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATATTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTGTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGAc < 2:1581405/150‑1 (MQ=255) tGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACt < 2:1847754/150‑1 (MQ=255) gAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCTC‑GCCTGCGACGCAGACAACTg > 1:1917767/1‑150 (MQ=255) gAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTg > 1:1527297/1‑150 (MQ=255) aCATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGGCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGAtt < 2:1464444/150‑1 (MQ=255) cATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCTACGCAGACAACTGATTc > 1:1233704/1‑150 (MQ=255) ttACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAATACTGCTACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCTACGCAGACAACTGATTCGc > 1:133937/1‑150 (MQ=255) ttGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAActtc > 1:1631140/1‑150 (MQ=255) tGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGACACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAActtct > 2:907059/1‑150 (MQ=255) aGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAgc < 2:498182/150‑1 (MQ=255) ggATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCGTTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAgcg > 2:764880/1‑150 (MQ=255) ggATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAgcg > 2:390023/1‑150 (MQ=255) ggATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAgcg < 2:1271202/150‑1 (MQ=255) tttCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGAt < 1:897681/150‑1 (MQ=255) ttCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATa < 2:1538505/150‑1 (MQ=255) aTGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACACCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTAGCCAACTTCTTGAGCGCGATaaaa > 1:1769787/1‑150 (MQ=255) tGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAAc < 1:1881256/150‑1 (MQ=255) aaCGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAAcccc > 1:501569/1‑150 (MQ=255) gTGCGAGTAAAATGCCGTCATCTTAGTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGtt < 1:1014853/150‑1 (MQ=255) gCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAg < 2:1112361/150‑1 (MQ=255) gCGAGTAAAATGCCGTCATATTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAg < 1:1680848/150‑1 (MQ=255) cGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACAGCAGGCCGCGC‑GCCTGCGACCCAGACAACTTATTCGCCAACATCATGAGCGAGATAACACCCCGATatc > 1:338750/1‑148 (MQ=255) aaaTGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCAtttt < 2:1213569/150‑1 (MQ=255) aaTGCTGTCATCTTATTTGTATGACCAATAAGTGAGCATTGGATGAAAACTGATACTCCCTCTTTATAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTg < 1:963608/150‑1 (MQ=255) tGCCGTCTTCTTATTTTTATGAGAAATAAGTTATCATTGGTTTATATCTGTTACTCCCTCTTTAGATACACCGCAGGACGCTC‑GCCTGGGACGCAGACAACTGATTCGCGAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGtt < 1:1536680/150‑1 (MQ=255) tGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGtt < 1:195661/150‑1 (MQ=255) tGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGtt < 1:102894/150‑1 (MQ=255) gCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGttt < 2:205859/150‑1 (MQ=255) gCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACACCGTTAGACATTTTGttt > 2:1363424/1‑150 (MQ=255) gTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTTCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATg < 1:539169/150‑1 (MQ=255) gTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTCAGAAACACCGCAGGCCGCGC‑GCCTGAGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATg < 2:1193485/150‑1 (MQ=255) gTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAAATGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAAATGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATg < 2:1204379/150‑1 (MQ=255) tCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATgg < 1:1162959/150‑1 (MQ=255) cATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggc > 2:1042562/1‑150 (MQ=255) cATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggc < 2:1426788/150‑1 (MQ=255) gtCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTTGCCATTTTGTTTATggcg > 1:488989/2‑150 (MQ=255) cTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggcggc < 1:1100/150‑1 (MQ=255) cTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggcggc > 2:1685255/1‑150 (MQ=255) ttGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTCGCCAGTTTGTTTATGGCGGCAgtcg > 1:29219/1‑150 (MQ=255) tGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAgtcgt < 1:1935013/150‑1 (MQ=255) aTGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCgg < 1:1480055/150‑1 (MQ=255) gACCAATAAGTGATCATTGGATGAAAGCTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCa > 2:1590317/1‑150 (MQ=255) ccacttaGTGATATTTGGATGAAAAGTGATACTCCCTCATTAGAAATACCGAAGGCCGCGG‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACg < 2:1471043/144‑1 (MQ=255) cAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGc > 2:1195696/1‑150 (MQ=255) cAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGc > 2:904117/1‑150 (MQ=255) aaGTGATCATTGGATGAAAACTGATTCTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCttgt > 2:1636793/1‑150 (MQ=255) aaGTGATCAGTGGATGAAAACTGATTCTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGCTTCGCCATCTTCTTGAGCGCGATAAACCCGCGTTAGCCTTTTTGTTTATGGCGGCTGTCGTCGGCACGGttgg > 2:411320/1‑149 (MQ=255) gTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCttgttg > 2:675753/1‑150 (MQ=255) cATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTg < 1:1110304/150‑1 (MQ=255) aTTGGATGAAAAATGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTgg < 2:133937/150‑1 (MQ=255) gATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATATAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGc > 1:1732797/1‑150 (MQ=255) gAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCAGTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGt > 2:1830600/1‑150 (MQ=255) aaCTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGc < 2:691038/150‑1 (MQ=255) aaCTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGc < 1:898776/150‑1 (MQ=255) tGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCttt < 2:1872684/150‑1 (MQ=255) gATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCtttt < 1:1673096/150‑1 (MQ=255) aCTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGAc < 2:843469/150‑1 (MQ=255) ccTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAg < 2:1887680/150‑1 (MQ=255) ctctTTCGAAACACCGCAGGCCGCGC‑GCCTGCGACGCACACAACTGATTCGCCAACTTCTTGAGCGCGTTATAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGAGAAAgg < 2:949510/150‑1 (MQ=255) ctctTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCGATTTTGTTTATGGCGGCAGTCGTCGGCGCGCTTGTTCGGCAGGCAGCGGTTGCTTTTGACTAAgg > 2:798551/1‑150 (MQ=255) tttAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGgtgt > 1:1610929/1‑150 (MQ=255) tAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCCCGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCg > 1:30470/1‑150 (MQ=255) aGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGc < 1:466693/150‑1 (MQ=255) tctgcgtcGCAGG‑CGCGCGGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCAGGCAGCGGTTGCTTTTGACAAAGGTGTCGcc > 2:1739444/8‑150 (MQ=255) gAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGcc > 1:1585979/1‑150 (MQ=255) gAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGcc > 2:797681/1‑150 (MQ=255) tgcgtcGCAGG‑CGCGCGGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGCCTg > 1:1365817/6‑150 (MQ=255) aaCACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGCCTg < 2:1492751/150‑1 (MQ=255) acacCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACGAAGGTGTCGCCTgg < 2:1527297/150‑1 (MQ=255) acacCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGCCTgg < 2:501569/150‑1 (MQ=255) cgtcGCAGG‑CGCGCGGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCGTTTGACAAAGGTGTCGCCTGGt > 1:1668161/4‑150 (MQ=255) gtcGCAGG‑CGCGCGGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGCCTGGtt > 2:578819/3‑150 (MQ=255) ccGCAGGCCGCGC‑GCCTGCGACGCAGACGACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGCCTGGTTg > 1:373976/1‑150 (MQ=255) cGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGCCTGGTTGc < 2:540924/150‑1 (MQ=255) gCAGGCCGCGC‑GCCTGCGACGCAGACAACTTATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGCCTGGTTGCa < 2:1913083/150‑1 (MQ=255) ggCCGCGA‑GCCTGCGACGCCGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTCTGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGCCTGGTTGCAGaa < 2:1997679/150‑1 (MQ=255) gCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCACCTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCCCGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGCCTGGTTGCAGAAc > 1:1240923/1‑150 (MQ=255) ccGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACTAAGGTGTCGCCTGGTTGCAGCAcc > 2:362085/1‑150 (MQ=255) ccGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGCCTGGTTGCAGAAcc > 2:330973/1‑150 (MQ=255) | GTATAAAAGTTTTGTGCATTTGAAACATTACGCTTTGCAAAGGATTTTCATGGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGC‑GCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGCTGGCAGCGGTTGCTTTTGACAAAGGTGTCGCCTGGTTGCAGAACC > NC_000913/174999‑175293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |