New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4574555 =	125 (1.060)	4 (0.040)	3/264	NT	3.6%	pseudogene (637/2937 nt)	yjiV	pseudogene; conserved hypothetical protein
	?	NC_000913	4574591 =	97 (0.870)					pseudogene (673/2937 nt)	yjiV	pseudogene; conserved hypothetical protein
Rejected: Frequency below/above cutoff threshold.

GGCTGTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4574710‑4574555 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaccGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAG  >  NC_000913/4574591‑4574738                                                                                                                                                                                                                                                                                                                  GGCTGTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGG                                                                                                                                                            >  2:1559953/1‑150   CTGTCCCTTTTCGACTGTCTGTATAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCC                                                                                                                                                          <  1:1211799/150‑1   CTGTCCCTTGTCGTCTGTCTGTAAAGGGGAGGAGTCGACGACATCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCC                                                                                                                                                          <  2:294399/150‑1    ttTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGAGGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCC                                                                                                                                                         <  2:1623311/148‑1    TGTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCC                                                                                                                                                         >  1:1432580/1‑150      TCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTTCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCAC                                                                                                                                                       <  2:1720912/150‑1       CCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGCCGCCCTCTTTGACTTCATCACTGGTAGAGTCCTGACAATTCACTAGAACGGTGGGAACGATATTAGTAACGTAAAATTGCCCACC                                                                                                                                                      >  1:1832452/1‑150       CCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCACC                                                                                                                                                      >  1:1098989/1‑150                                                                                                                  CTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCG                                           >  2:883470/1‑150                                                                                                                      AACGGTGGGCACGATATTAGTAACGTAATATGGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGCCTCATCACCGTTACAGACAGTCGACAA                                       >  2:1283100/1‑150                                                                                                                      AACGGTGGGCACGATATTAGTAACGTAAAATGGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAA                                       >  2:1928921/1‑150                                                                                                                       ACGGTGGGCACGATATTAGTAACGTAAAATGGCCCACCGTTCTTGAGTATTGGCTGGACTTTACAACTGATGAAGTCAAAGCGGGCGTCGGACCAGATTCGTTGCCATGACGAGGTCCTCGACTCATCACCTTTGCAGACATTCGACAcg                                      >  2:312606/1‑148                                                                                                                                                      GCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCA       >  2:277320/1‑150                                                                                                                                                        CCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTTGTTGCCAGGACGAGGTCGTCGACGCATCACCTTTACAGCCAGTCGACACGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAG     >  2:1613844/1‑150                                                                                                                                                         CACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGA    <  2:1765405/150‑1                                                                                                                                                         CACCGTTCTAGAGTATTGACAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGA    <  1:967093/150‑1                                                                                                                                                           CCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAG  <  1:199310/150‑1                                                                                                                                                           CCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAG  <  1:1912750/150‑1                                                                                                                                                                                                                                                                                                                  GGCTGTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4574710‑4574555 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaccGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAG  >  NC_000913/4574591‑4574738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.