| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2947467 | 19 (0.160) | 3 (0.040) +TTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCC |
3/198 | NT | 5.9% | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| ? | NC_000913 | = 2947757 | 116 (0.980) | coding (1254/1254 nt) | amiC | N‑acetylmuramoyl‑L‑alanine amidase | |||||
ATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT > NC_000913/2947321‑2947575 | aTCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTaaaa < 1:661842/150‑1 (MQ=255) tCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAAt < 1:443580/150‑1 (MQ=255) gTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtg < 1:1461869/150‑1 (MQ=255) gTGAGCGGGGTAAAAAACCGGCGGCAGGACCCCGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtg < 2:949750/150‑1 (MQ=18) tGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaaaaa > 1:1666127‑M1/1‑142 (MQ=255) taTCGGTGTAAAAAAAAGGCTGCAGGAAAACGCGAGCGGAGTCTAGTGCGCCTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATACCCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtgat < 2:1256118/149‑1 (MQ=21) gATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTTTAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGTATCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtgat < 1:263159/150‑1 (MQ=255) gATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtgat < 2:902036/150‑1 (MQ=255) gATAGGGGTAAAAAAACGGGTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGATCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCACATCCGGCCCCCGCAACCAATTAAAATTtgat < 2:909951/150‑1 (MQ=25) ggggTAAAAAAAAGGTTGCATGAAAACACGAGCGGAGTATAGTGCGCATCAACGGACGCGGGGTGGATCAGCCTGGTAGCTCGTCTGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAg < 1:1374147/150‑1 (MQ=255) gTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAATTTTCATAAAGTaa > 2:1533137/1‑150 (MQ=255) tAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATGGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacggg < 2:447362‑M1/150‑18 (MQ=255) aaaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGc < 1:752286/150‑1 (MQ=255) aaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAg < 1:1504633/150‑1 (MQ=255) aaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgttt > 1:1722038‑M1/1‑128 (MQ=255) aaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGt < 2:393115/150‑1 (MQ=255) ggTTGCATGAAAACGCGAGCGGAGTATAGTGAGCATCCACGGAAGCGGGGTGGAGCAGACTGGTATCTCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACgg < 2:350036/150‑1 (MQ=21) ggTTGCATGAAAAATCGAGCGTAGTATAGTGCGCATCCACTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgttttttt < 2:1666127‑M1/150‑27 (MQ=255) gTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGt < 2:1818731/150‑1 (MQ=255) gCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAtttaacacactaaagggtgtttttttgttt > 2:1964239‑M1/1‑120 (MQ=255) aTGAAAACGCGAGCGGAGTATAGTGCGCATCCCCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttct < 1:1964239‑M1/150‑33 (MQ=255) aTGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGGAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTGCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcgc < 2:1561245/150‑1 (MQ=255) tGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacacccaaacgggtgtttttttgtttctg > 1:491964‑M1/1‑117 (MQ=255) aaaCCCGATCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTAGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCgggg < 2:1219198/150‑1 (MQ=255) gAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctggtctcccat < 2:1722038‑M1/150‑43 (MQ=255) gAGCGGAGTATACTGCGCATCCTCTTACGCGGGGTGCAGCAGCCTGTTAGCTCGTCGTTCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGagc < 1:516691/150‑1 (MQ=17) gAGCGGAGTAAACTGCGCATCCACGGCCGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGGCCCCCGCAAGCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGagc < 1:917984/150‑1 (MQ=17) gTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTgg < 2:635321/150‑1 (MQ=255) taGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctggtctcccataaaaaagcgc < 2:491964‑M1/150‑53 (MQ=255) ggAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctggtctcc > 2:1606805‑M1/1‑73 (MQ=255) ggAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctggtctcc < 1:1606805‑M1/112‑40 (MQ=255) ggAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggt < 1:1070824‑M1/91‑19 (MQ=255) ggAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggt > 2:1070824‑M1/1‑73 (MQ=255) gCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctggtctcccataaaaaggcgctgaatggcgcttttttatggg > 2:902675‑M1/1‑59 (MQ=255) gCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctggtctcccataaaaaggcgctgaatggcgcttttttatggg < 1:902675‑M1/132‑74 (MQ=255) ggCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttg > 2:2017319‑M1/1‑51 (MQ=255) ggCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttg < 1:2017319‑M1/78‑28 (MQ=255) cccGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttg > 2:1164433‑M1/1‑42 (MQ=255) cccGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttg < 1:1164433‑M1/69‑28 (MQ=255) cccGAAGGTCGTATGTGCTAATCCGTACCCCGGAACGAATTATAATTTGTTGAAGAAACGCATTACTGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAt < 2:11028/150‑1 (MQ=11) | ATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT > NC_000913/2947321‑2947575 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |