| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,466,336 | C→G | 9.8% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,466,336 | 0 | C | G | 9.8% | 193.2 / 3.0 | 73 | pseudogene (945/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base C (35/30); new base G (4/4); total (39/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGA > NC_000913/1466187‑1466485 | aTTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTggcaccggcacc < 1:811211/150‑1 (MQ=255) gATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAg < 2:1347436/150‑1 (MQ=255) gATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAg < 2:266875/150‑1 (MQ=255) aaatCACCGGGGTCATCGCGACGGTGGCAAACCACGGCACCAAGACCGTCACCGATCCCGAGACCAAGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:450949/148‑1 (MQ=17) atCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGACGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGAtt > 2:502016/1‑150 (MQ=255) cACCGGTGGCAGCGCGACGGTGGATACCAAGGGCACCATGACCGTCACCGATCCGGAGTCCAGGGGTATCCAGCGCGCCGGTGCCAAGGCCATCGTCAATAACGAAGGCGAGGGCACCATCACCAACGGTGGCACCGGCACCCAGATaaa > 1:134221/1‑150 (MQ=17) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAAt < 1:1813510/150‑1 (MQ=255) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAAt < 2:831554/150‑1 (MQ=255) cctgttaCAGCGGGACGGTGGATAACACCGGCAGCATGACCGTTACCGATCCGGAGTCCATGGGTAGCCATATCGACGGTGACAAGGCAATCGTCAAAAACGAAGGAGAGAGCACGATCACCAACGGTGGCACCGGCACCCAGATTAAtt < 2:201657/144‑2 (MQ=17) ccGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATg < 1:1382534/150‑1 (MQ=255) ccGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATg < 2:1362462/150‑1 (MQ=255) ggTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGt < 1:1989276/150‑1 (MQ=255) ggTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGGCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGt < 2:35835/150‑1 (MQ=255) gTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtg > 1:1353984/1‑150 (MQ=255) gTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtg < 2:549574/150‑1 (MQ=255) gTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGGCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAAGGATGGCTAGAGCACCATCACCTACGGTGGCACCGGCACCCAGATTAATGGtg < 2:829183/150‑1 (MQ=18) ggACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtga < 1:383349/149‑1 (MQ=255) gACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACTGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtgat < 2:483444/150‑1 (MQ=255) aCAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCTGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtgatg < 1:1652510/150‑1 (MQ=255) cAGCGCAACGGTGGATAACAAGGACACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCCACGGTGGCACCGGCCCCCAGAGTTAGGGtgctgc > 2:343927/1‑149 (MQ=14) gcgcGACGGTGGATAACAAGGGCACCATCACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACg < 1:1004295/150‑1 (MQ=255) cgACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCCCCCAGAGTAATGGTGATGACGcac > 1:682633/1‑148 (MQ=255) gTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCa > 1:1143517/1‑150 (MQ=255) ggATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGAGACGGCCATCGTCAATAACGAAGGCGAGAGAACCATCACCCTCGGTGGCCGCGGGACCGAGCTTAAGGGTGTGGACGCGCCGGCaaa > 2:128199/1‑150 (MQ=17) aTAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATAGTAAAAAACGAAGGCGAGAGCCCCATCACCAACGGTGGCACCGGCACGCAGATTAAAGGTGATGACGCCACGGCAaaca > 2:760501/1‑150 (MQ=14) aTAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCAAGTTCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGTGAGCACAATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaaca < 2:453712/150‑1 (MQ=255) aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTGTACATATCGAAGGTGACAAGGCCATCGTCAATAACTAAGTATACATCCCCATCACCCACGTTGGCACCGGCACCCAGATTTATTGTGATGCATCCCCGGAAaacaaaa > 2:350202/1‑148 (MQ=12) aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaacaaca > 1:1813736/1‑150 (MQ=255) aCAAGGGCACCATGACCGTCACCGATCCGGAGACCATGGGTATCCAGATCGACGGTGACAAGGCCATAGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAAAGGTGATGACGCCACCGCAaacaaca > 1:1402549/1‑150 (MQ=255) aaGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaacaacaac < 2:554088/150‑1 (MQ=255) gggCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCCTCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACgg > 2:394138/1‑150 (MQ=255) gggCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATAGACGGGGACAAGGCCCTAGTCAATAACGAAGGCGAGAGCGCCATCACCAACGGTGGCCCCGGCACCCAGATTAAGGGTGATGACGCCACGGCAAACAACAACgg > 2:21099/1‑150 (MQ=14) ccGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATTGTCAATAACGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGtgatg < 2:462846/111‑1 (MQ=17) ccGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACg < 2:988765/150‑1 (MQ=255) ccGATCCGGAGTCCATGGGTATCCAGATAGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGtgatg > 1:462846/1‑111 (MQ=17) gagccGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGGCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGc < 2:834832/147‑1 (MQ=255) gATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCCCCCAGAATAATGGTGATGACGCCCCGGCAAACAACAACGGCAAACCCACCCTTGACGGc > 2:717698/1‑150 (MQ=18) gATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGAATAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGc > 1:486314/1‑150 (MQ=255) tCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAaaca < 1:848854/122‑1 (MQ=255) tCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAaaca > 2:848854/1‑122 (MQ=255) gAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAt < 2:1752874/150‑1 (MQ=255) ccATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCCCCATCACCAACGGTGGCACCGGCACCCAGATTATTGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTccc > 1:94762/1‑149 (MQ=255) cATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACAATCACCAACGGTGGCGCCGGCACCCAGAGTAATGGTGATGACGCCCCGGCAAACAACAAATGCAAAACCACCGTTGACGGCAAGGATTGCAc > 2:1460788/1‑150 (MQ=18) tGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTCGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCg > 2:26619/1‑150 (MQ=255) tGGGGATCCAGATGGACGGTGACTAGGCCTTCGTCTCTCAGGCAGCATAGAGGACGATCTACAACCTTGGCACCGTGAACCAGATTACTGGTGATTAGGCCACTGTAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCg < 2:620400/150‑1 (MQ=9) gTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTa > 1:1509029/1‑150 (MQ=255) tATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTAc > 1:1577011/1‑150 (MQ=255) tCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACGCAGATTAAGGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAt < 2:1172729/137‑1 (MQ=255) tCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAt < 2:1909751/137‑1 (MQ=255) tCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAt > 1:1909751/1‑137 (MQ=255) tCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAAGGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAt > 1:1172729/1‑137 (MQ=255) ccAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGCCGCCCCGGCCAACACCCCCGGCAACACCACCGTTGCCGGCAAGGCTTCCACCGGTCCGGa > 2:1283126/1‑150 (MQ=18) ccAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCAACAACGGATGCACCTGCACGAAGTTAAATGTTGATTACGCCACGGCAAACAACAAAGGCATAAACACAGATGAAAGCAAGGATTCCACCGGTACggg > 2:2008178/1‑149 (MQ=17) cAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGaa > 2:991594/1‑150 (MQ=255) ttCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGATAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATc < 2:1806987/149‑1 (MQ=255) gtcGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAATACCACCGTTGACGGCAAGGATTCCACCGTTACGGAAATCAAc < 1:91807/148‑1 (MQ=255) gACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCACCGGTGGCACCGGCACCCAGTTTAATGGTGATGACGCCCCGGCAACCAACACCGGCAAAACCCCCGTTGACGGCAAGGCTAGCACCGGTACGGAAATctcc > 1:371347/1‑147 (MQ=25) gACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAAc > 1:1130641/1‑150 (MQ=255) gACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAAc > 1:1424815/1‑150 (MQ=255) gACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCCCCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGACATCAACGGtaat > 1:350490/1‑150 (MQ=255) cAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTacggaaataaacggaaataa > 2:1953118/1‑150 (MQ=255) cAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGtaataa > 1:896408/1‑150 (MQ=255) aaGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTTATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCGACCGGTACGGAAATCAACGGTAATAAc < 2:70109/150‑1 (MQ=255) gCCATCGTCAATAACGAAGGCGAGAGCACCATCACCACCGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGa < 2:958979/150‑1 (MQ=255) cAATAACGAAGGCGAGAGCACCATCACCCACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGCCAAGGATTCCACCGGTACGGAAATCAACGGAAATAACGGAAAAGatat > 1:1835641/1‑150 (MQ=255) ggCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGAAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGc > 2:1795793/1‑150 (MQ=255) gCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTgg > 2:417815/1‑150 (MQ=255) ccACCATCACCACCGCTGGCACCGGCACCCAGATTAATCGTGATGACGCCACGGCAAACAACAACCGCAAAACCACCGTTGACGGCAAGGATTCCAGCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTgg < 1:1984376/149‑1 (MQ=17) cACCATCACCAACGGTGGCACCGGCACCCAGATTAATTGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGa < 2:2009955/150‑1 (MQ=255) ccATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATg < 1:394138/150‑1 (MQ=255) aaCGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaac < 2:517130/48‑1 (MQ=255) aaCGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaac > 1:517130/1‑48 (MQ=255) cGGTGGAACCGGAAACCATAATAAAGAAGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGCCGGCAAGGATTCCCCCGGTACGGAAATTAAAGGGAATAACGGAAAAGTGATTCAGGACGGCGATCTGGATGTCAgcggcgg > 2:290897/1‑150 (MQ=11) tGGCACCGGCACCCAGATTAATGGTGATGACGCCACTGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCTAACGAAATAACGGAAATGTTATTCAGGACGGCGATATTGATGTCAGaggcggcgg > 2:980659/1‑150 (MQ=14) ggcaccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGt < 1:502016/150‑1 (MQ=255) ggcaccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGt > 2:1142895/1‑150 (MQ=255) ggcaccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGt < 1:343927/150‑1 (MQ=255) caccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAcc > 1:113324/1‑79 (MQ=39) caccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAcc < 2:113324/79‑1 (MQ=39) caccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTcc > 2:1025194/1‑149 (MQ=255) caccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTAGACGGCAAGGATGCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa < 1:128199/150‑1 (MQ=255) ccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAg > 2:154345/1‑68 (MQ=40) ccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAg < 1:154345/68‑1 (MQ=40) ccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAATGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACg < 1:608726/150‑1 (MQ=255) ccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTTCGGATATAAACGGTAAGTACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACg > 1:1823972/1‑150 (MQ=17) caccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTAt > 2:1010584/1‑150 (MQ=255) cccAGATTAATGGTGATGACGCCACTGCAAACATCAACTGCAAAACCACCGGTGACGGCAATGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAACGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTg < 2:134221/150‑1 (MQ=17) cccAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCCCCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGAGGGCGATCTGGATGTCCGCGGCGGCGGTCACGGTATTg > 2:348913/1‑150 (MQ=255) cccAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTg > 1:1693748/1‑54 (MQ=40) cccAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTg < 2:1693748/54‑1 (MQ=40) cccAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAAGGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGTATGTCAGCGGCGGCGGTCACGGGATTg > 2:1209625/1‑150 (MQ=255) cccAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGAAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTg > 2:298046/1‑150 (MQ=255) cccAGATTAATGGTGATGAAGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAACGGTACGGAAAACAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTg > 1:977967/1‑150 (MQ=255) ccAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGa < 1:26619/150‑1 (MQ=255) ccAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGa > 1:846037/1‑150 (MQ=255) | ATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGA > NC_000913/1466187‑1466485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |