| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 448,363 | A→T | 5.7% | S100T (TCC→ACC) | cyoC ← | cytochrome o ubiquinol oxidase subunit III |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 448,363 | 0 | A | T | 5.7% | 417.5 / 7.4 | 143 | S100T (TCC→ACC) | cyoC | cytochrome o ubiquinol oxidase subunit III |
| Reads supporting (aligned to +/- strand): ref base A (66/68); new base T (7/2); total (73/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 153 total aligned reads displayed.
GTGCAGACCGTGCGTGCCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCGGTGCCGTTCACCA > NC_000913/448214‑448512 | gTGCAGACCGTGCGTGCCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGga > 2:1693350/1‑150 (MQ=255) ttcAGACCGTGCGTGCCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATTGAATTCATTGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGgag < 2:1316236/148‑1 (MQ=255) gCAGACCGTGCGTGCCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGCCCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGgaga > 1:983198/1‑150 (MQ=255) gCAGACCGTGCGTGCCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGgaga > 2:899239/1‑150 (MQ=255) gCAGACCGTGCGTGCCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGgaga < 1:1365915/150‑1 (MQ=255) gACCGTGCGTGCCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATaa > 1:907617/1‑150 (MQ=255) ccGTGCGTGCCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAccc > 2:699319/1‑150 (MQ=255) cgtgcgtgCCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAAccg > 2:1664648/1‑149 (MQ=255) cgtgcgtgCCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCt < 2:1941092/150‑1 (MQ=255) gtgcgtgcCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTg > 2:1369890/1‑150 (MQ=255) tgcCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCttt > 1:1721756/1‑150 (MQ=255) gACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGTTATCTCCTGGCtggcgtt < 2:1787979/150‑7 (MQ=255) gACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTttgtt < 1:1243996/150‑1 (MQ=255) gACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTttgtt < 2:465585/150‑1 (MQ=255) gcAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGGTAACAATCCGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTg > 1:111286/1‑150 (MQ=255) cAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGt < 2:927148/150‑1 (MQ=255) cAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGt < 1:1625256/150‑1 (MQ=255) aaaGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTa > 2:761826/1‑150 (MQ=255) aaaGAACGCTGACAGGAAGCCGCTGCGATACGGAACCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCAAGATAAATCCGGCACCAAACAACAAGGTCAACTCCAGCCAGGTGCTAACCTGGATTTTGTTGTTTTTGTa > 1:1085872/1‑150 (MQ=255) aGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACa < 1:1623120/150‑1 (MQ=255) gAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACAt > 1:557454/1‑150 (MQ=255) cGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGc < 1:2001821/150‑1 (MQ=255) cGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGCTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGc > 2:142282/1‑150 (MQ=255) cGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATACCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGc > 1:1896266/1‑150 (MQ=255) tGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGTTAACCTGGCTTTTGTTGTTTTTGTACATGGCGaa > 1:1957742/1‑149 (MQ=255) tGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGAt < 1:572482/150‑1 (MQ=255) cAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAgc > 2:498608/1‑150 (MQ=255) aGGACGCCGCTGCGATCCGGACCCATGCCGTTAATAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGGCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAgcc < 1:1948720/150‑1 (MQ=255) ggAAGCCGCGGCGATCCGGACCCATGCCGTTAACACTCAGGTGAGGGAATTCATAGATTTCCCTCCCGATAAATCCGGCACCAAACATCCAGGTCAAAGCCAGCCAGGAGAAAACCTGGCTTTTGTTGTTTTTGTACATGTCGATAgccg < 2:275754/150‑1 (MQ=255) aGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCa > 1:142063/1‑150 (MQ=255) aGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCa > 2:208267/1‑150 (MQ=255) gCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGTTAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTATACATGGCGATAGCCGCCAt < 1:1520342/150‑1 (MQ=255) gCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCAt > 2:1360982/1‑150 (MQ=255) ccGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATg < 1:256909/150‑1 (MQ=255) ccGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATg > 2:853071/1‑150 (MQ=255) gCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGcc > 1:1740273/1‑150 (MQ=255) gCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTa > 2:1832001/1‑150 (MQ=255) gCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTa > 2:32637/1‑150 (MQ=255) gATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAACCAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTTTTTTTGTACATGGCGATAGCCGCCATGCCGTAgg > 2:28984/1‑150 (MQ=255) tCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTg < 2:1222049/150‑1 (MQ=255) tCCGGACCCATGCCGTTAACAATCACGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTg < 2:103227/150‑1 (MQ=255) ccGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGa < 1:608883/150‑1 (MQ=255) cGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGAt > 1:359485/1‑150 (MQ=255) cGGACCCATGCCGTAAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGAt > 2:1119545/1‑150 (MQ=255) cccATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAg > 1:75040/1‑150 (MQ=255) cccATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTATTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAg > 1:59891/1‑150 (MQ=255) cATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCt > 2:1856747/1‑150 (MQ=255) cATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCt < 2:1547068/150‑1 (MQ=255) tGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGa < 2:1984532/150‑1 (MQ=255) gCCGTTAACACGCAGGCGATGGAATTCATCCATTTCCATCCCGATAAATCAGGCACCAAACATCCACGTCCACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATCGCGCTAGCCGCCATGCCGAAGGTGATGGAGCTGaa < 2:349533/150‑1 (MQ=255) ccGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGTGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGaac < 2:24495/150‑1 (MQ=255) ccGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGaac < 1:1442977/150‑1 (MQ=255) ccGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGaac < 2:1059934/150‑1 (MQ=255) aaTCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCaa > 1:123403/1‑150 (MQ=255) cgggATGGAAATCTATGAATTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAg > 1:472006/4‑150 (MQ=255) gTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGt > 1:1318342/1‑150 (MQ=255) aTGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTc > 1:1657554/1‑150 (MQ=255) tGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATTACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGTACAACAGCAAGTAAGTTTCa > 1:1030461/1‑150 (MQ=255) tGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGATCAACAGCAAGAAAGTTTCa > 2:728135/1‑150 (MQ=255) tGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCa > 2:1156586/1‑150 (MQ=255) tGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCa < 1:1879081/150‑1 (MQ=255) tGGAATTCATAGATTTACATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGACAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATCGCGATAGCCGCAAAGCCGAAGGTGATGGAGATGAACAACAGCAAGAAAGTTGCa > 2:408948/1‑150 (MQ=255) ggAATTCATAGATTTCAATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCaa < 2:557454/150‑1 (MQ=255) aaTTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAAcc < 1:1601672/150‑1 (MQ=255) aaTTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAAcc < 2:1170552/150‑1 (MQ=255) aTTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCa < 1:975621/150‑1 (MQ=255) cATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAgaa > 1:762432/1‑150 (MQ=255) cATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGATTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAgaa > 1:317619/1‑150 (MQ=255) aTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAgaac < 1:463076/150‑1 (MQ=255) tAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAgaacg > 1:681153/1‑150 (MQ=255) ttCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACgg > 2:1772958/1‑150 (MQ=255) tCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGc < 2:1070064/150‑1 (MQ=255) cATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCATCCAGAACGAACGGCAg > 1:1326851/1‑150 (MQ=255) cATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAg > 1:1543124/1‑150 (MQ=255) gATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGaa > 1:859318/1‑150 (MQ=255) aTAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGaaa < 2:1126361/150‑1 (MQ=255) tAAATCCGTCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGaaaa < 2:622791/150‑1 (MQ=255) tAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGaaaa < 1:1450414/150‑1 (MQ=255) aTCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGGTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGGTCGAAAATgg > 1:325518/1‑149 (MQ=255) cAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTg < 2:248719/150‑1 (MQ=255) aacCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTCTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCggg < 2:52015/150‑1 (MQ=255) acCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGATCGGCAGTTCGAAAATGTCCTTACCTGTCGGgc > 1:821452/1‑150 (MQ=255) cAGGTCAACGACAGCCAGGAGATATCCTGGCTTTTGTTGTTTTTGTACATGGCGATTGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTGCTTACCTGTCGGgccg < 2:1019427/150‑1 (MQ=255) ggTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGgccgcc > 2:1284877/1‑150 (MQ=255) ggcAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCt < 1:208267/148‑1 (MQ=255) aaCGTCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCg > 2:841074/1‑150 (MQ=255) aaCGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCAATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCg < 1:1016231/150‑1 (MQ=255) acaaaagccagGTTATCTCCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCgg > 1:1388549/6‑150 (MQ=255) aCGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCgg < 2:40054/150‑1 (MQ=255) gccagccaGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCGGTg < 1:757545/150‑1 (MQ=255) aaaagccagGTTATCTCCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGAAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCGGTg > 1:1877014/4‑150 (MQ=255) aaagccagGTTATCTCCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCGGTGc > 1:879403/3‑150 (MQ=255) agccagGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCGGTGCCg < 1:899239/150‑1 (MQ=255) agccagGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCGGTGCCg < 2:1321398/150‑1 (MQ=255) gccagGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCGGTGCCGt > 2:872007/1‑150 (MQ=255) ggAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCGGTGCCGTTCAc < 1:699319/150‑1 (MQ=255) gagaTAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCGGTGCCGTTCAcc < 1:761826/150‑1 (MQ=255) gagaTAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCGGTGCCGTTCAcc < 2:1504806/150‑1 (MQ=255) cagaTAACCTGGCTTTTGTTGTTTTTGTACATGGCCAAACCCGCCAAGCCGTAGGTGAGGGAGCTGAACAACAGCAAGAAAGTTACAACCAGAACGAACGGCAGTTCGATAATGACCTTACCTGTCGGGCCGCCTGCGGTGCCGTTCAcc < 1:1272016/149‑1 (MQ=255) agaTACCCTGGCTTTTGTAGTTTTTGTACTTGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACATCATCAAGAAAGTTTCAACCATAACGAACGGCAGATCGAAAATGTCCTTACCTGTCGGGCCGCCTGCGGTGCCGTTCACCa < 1:1791691/150‑1 (MQ=255) | GTGCAGACCGTGCGTGCCGACCAGCGCAAAGAACGCTGACAGGAAGCCGCTGCGATCCGGACCCATGCCGTTAACAATCAGGTGATGGAATTCATAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACCAGAACGAACGGCAGTTCGAAAATGTCCTTACCTGTCGGGCCGCCTGCGGTGCCGTTCACCA > NC_000913/448214‑448512 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |