New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4451146	232 (0.990)	6 (0.030)	4/260	NT	2.4%	coding (89/1503 nt)	ytfR	putative sugar ABC transporter ATPase
	?	NC_000913	= 4451198	264 (1.210)					coding (141/1503 nt)	ytfR	putative sugar ABC transporter ATPase
Rejected: Frequency below/above cutoff threshold.

AAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4450990‑4451146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgatttTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGGTTTCCC  <  NC_000913/4451198‑4451050                                                                                                                                                                                                                                                                                                                    AAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACG                                                                                                                                                              >  2:2440179/1‑150    CCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTG                                                                                                                                                           >  2:1481025/1‑150      TGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGAT                                                                                                                                                         <  2:1249729/150‑1      TGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGAT                                                                                                                                                         <  2:1249675/150‑1      TGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGAT                                                                                                                                                         <  2:1249607/150‑1      TGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGAGTAAGTAAATTTTTCCCCGGCGTCTAAGCGTTAGACAACGTTGAT                                                                                                                                                         >  1:2364276/1‑150       GATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATT                                                                                                                                                        >  1:1168339/1‑150       GATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATT                                                                                                                                                        >  2:3404238/1‑150       GATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATT                                                                                                                                                        >  2:3404191/1‑150       GATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATT                                                                                                                                                        >  1:2539741/1‑150       GATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATT                                                                                                                                                        >  1:1168344/1‑150        ATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTT                                                                                                                                                       >  1:2875019/1‑150        ATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTT                                                                                                                                                       >  1:2875020/1‑150        ATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTT                                                                                                                                                       <  1:958428/150‑1                                                   TTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGG                                                                                                            >  1:3852210/1‑150                                                   TTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGG                                                                                                            >  1:3852232/1‑150                                                              GGAAACCATGACGACCGACCAACACCAGGAGGTCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAA                                                                                                 <  1:3758791/150‑1                                                                        ACGACCGACCACCACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTG                                                                                       <  2:3870559/150‑1                                                                          GACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTC                                                                                     <  2:3852210/150‑1                                                                          GACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTC                                                                                     <  2:3852232/150‑1                                                                                                                                                     CGTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCAT          <  1:1680439/150‑1                                                                                                                                                     CGTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCAT          <  2:1395145/150‑1                                                                                                                                                      GTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATG         <  1:3136361/150‑1                                                                                                                                                      GTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATG         <  1:2378829/150‑1                                                                                                                                                      GTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATG         >  1:2583623/1‑150                                                                                                                                                      GTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATG         <  1:2625197/150‑1                                                                                                                                                      GTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATG         >  2:520596/1‑150                                                                                                                                                      GTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATG         >  2:1452575/1‑150                                                                                                                                                      GTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATG         >  2:2516514/1‑150                                                                                                                                                      GTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATG         >  2:2013865/1‑150                                                                                                                                                      GTTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATG         >  1:3898579/1‑150                                                                                                                                                       TTGATTTTCCCGCCCCGTTTTCACCGAGCATCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAAAGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACATAATCCTTCGGAGCGGAGGATCTCCTGGTGTAGGACGGTCGTCATGt        >  2:851403/1‑149                                                                                                                                                       TTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGATATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGG        >  2:851507/1‑150                                                                                                                                                       TTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAACTCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTACTCCGGCGGTGCGGAGGAGCTCCTGGTGGTGGTCGGGCGTCATGG        >  2:925217/1‑150                                                                                                                                                       TTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAACTCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAAATTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGG        >  2:3080816/1‑150                                                                                                                                                       TTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGG        >  1:1305659/1‑150                                                                                                                                                       TTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGG        >  2:925171/1‑150                                                                                                                                                       TTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGG        >  1:2655144/1‑150                                                                                                                                                       TTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGG        >  1:1113540/1‑150                                                                                                                                                       TTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGG        >  2:3410818/1‑150                                                                                                                                                       TTGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGG        <  1:1896537/150‑1                                                                                                                                                       TTGATTCTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGG        >  2:851540/1‑150                                                                                                                                                        TGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGGT       >  1:2534772/1‑150                                                                                                                                                        TGATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGGT       >  1:2534861/1‑150                                                                                                                                                         GATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGGTT      >  2:2495310/1‑150                                                                                                                                                          ATTTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGGTTT     >  2:3257808/1‑150                                                                                                                                                            TTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGACAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGGTTTCC   >  2:3832411/1‑150                                                                                                                                                            TTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGACAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGGTTTCC   >  1:1297157/1‑150                                                                                                                                                            TTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGGTTTCC   >  2:3832562/1‑150                                                                                                                                                            TTTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGGTTTCC   >  2:1829934/1‑150                                                                                                                                                             TTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGGTTTCCC  >  1:286446/1‑150                                                                                                                                                                                                                                                                                                                    AAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACCAGGAGATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4450990‑4451146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgatttTCCCGCCCCGTTTTCACCGAGCAGCGCCATGATTTCGCCACGGCGCAGGCTGAAATCAACGTTGTCTAACGCTTTGACGCCGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGATCTCCTGGTGTTGGTCGGTCGTCATGGTTTCCC  <  NC_000913/4451198‑4451050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.