| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 164,581 | A→C | 19.9% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 164,581 | 0 | A | C | 19.9% | 136.5 / 13.6 | 87 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (33/35); new base C (2/17); total (35/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.10e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAG > NC_000913/164432‑164728 | ccGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCa > 1:369194/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGTCGGGGTGAGGGCAt > 2:473573/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCag > 1:2581194/1‑149 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt > 2:1040223/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt < 2:697964/150‑1 (MQ=255) gTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCAGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAgcgc > 2:3920518/1‑150 (MQ=255) tGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAgcgcg > 1:2005029/1‑150 (MQ=255) aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 1:3336334/1‑150 (MQ=255) aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:3537717/1‑150 (MQ=255) aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 1:1367068/1‑150 (MQ=255) gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtca > 2:1605340/1‑150 (MQ=255) aaaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTggacccccc > 1:3419221/1‑147 (MQ=255) aGGGCGTTATCCCAAACATGTCGGGCCGGCCGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctcacc < 2:2625144/150‑1 (MQ=255) gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACCCCCCAAc > 2:184491/1‑150 (MQ=38) gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACACCCaaaa > 2:3217745/1‑149 (MQ=255) gTTATCCCAAACATGTCGGCCCGCACGACCCGGCAAATACGGCACCGACGCGACGCACGAAAAATTTTGCGTACGGTTGGTTTTCCCCCTCCCCCTGTGGGAGAGGGCCGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAc < 2:2143591/150‑1 (MQ=255) gTTATCCCAAAAAGGTCTGGCCGGACGACCCGCCAAATACTGCCCCGACGCGACGCACTAAAAAGTATTCGTATGGTTGGTTTTCACCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAc < 2:2143610/150‑1 (MQ=37) gTTAGCCCAAACCGGCCTGGCCGGACCACCCGGCAAATCCTGCACCGACGCGACGGACGAAAATTTATCCGAAAGGTTGTTTTTCTCCCTCTCCCCGTGGGAGAGGGCCGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAc < 2:2143623/150‑1 (MQ=255) cccAAACCTGTGGGGCCGGACCCCCCGGAAAACCCGCCCCCGCCGCGCCGGACAAAAATGTTTTGTTTTGTTGGGTTTACCCCCCCGCCGGGGGGGTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCctct < 1:1537820/150‑1 (MQ=255) cccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCCAAaccaca > 2:2202277/1‑147 (MQ=255) cccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGGCCGCACCCCAAccccca > 1:726945/1‑147 (MQ=37) cccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCACCCAAAaccaca > 1:574477/1‑147 (MQ=38) cccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCCGCGCGCACGTGGACCCGCAACCCAAaccaca > 1:574526/1‑147 (MQ=37) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCTCACCCAAAcccacac > 2:1999880/1‑146 (MQ=255) aaaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGCCCCCCACCCAAACCCACAccc > 1:534611/1‑150 (MQ=37) ctggcgggccggccGCCCGGGCAAATCCGGCCCCGCCGCGACGGAGGAAAATGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGTGCGGGCCGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCaa < 2:3383516/144‑1 (MQ=25) aTGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCaa < 2:2420494/150‑1 (MQ=255) aTGTCGGGCCGGACGCCCCGGCAAATACTGCACCGACGCGACGGACGAAAATTTATTCTTACGGTTGGTTTTCTCCCTCTCCCTGTGGGTGTGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCaa < 2:2003609/150‑1 (MQ=38) gTCGGGCCGCACGACCCGGAAAATACGGCCCCGACGCGAGGGACTAAAATTTTTTCGTACGGTTGTTTTTCGCCCACGCCCTGTGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAgg < 2:392282/150‑1 (MQ=255) gCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCGACCCCACCCCAACCCTAACCCACACgggcggg > 2:2057916/1‑146 (MQ=37) gCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGGTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGagag < 2:3905575/150‑1 (MQ=255) ccGGACCACCCGCAAAATACTCCACCGAGGCGCCTGACGAAAAATTATTCGTATGGTTGTTTTTCTCCCTCTCCGTGTGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTTGAGGGAGAgg < 1:868897/150‑1 (MQ=255) ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGTCCCACACCCAAAACCACACCCGCAAAGGAGAgggg > 1:3138580/1‑150 (MQ=37) ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCGCCCACACCCAAAACCCCACCCCCAAaggggagggg > 2:1809060/1‑150 (MQ=37) gacgccCCGCAAAAGACCGCCCCCACGCGCCGCCCGAAAACGTATTCGTACGGTTGTTTTTCCCCCGCCCCGGGGGGGAGCGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGa < 2:3660711/150‑1 (MQ=255) gacgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCGAAACCACACCCCCAAggggggggggc > 2:3582522/1‑149 (MQ=37) ccccacCCGCAAAATACTCCCCCGCCGCGCCGGACCAAAATGTTTTCTTATGGTTGTTTTTCCCCCCCCCCCGGGGGTTGCGGGCGGGGGGGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGa < 2:3336334/146‑1 (MQ=255) cccGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGGGGCCCACACCCCAACCCACACCCACAACGGGGAGGGGGccccg > 1:3347825/1‑147 (MQ=25) aaagccTGCCCCGACGCGAGGGCCGAAACCGTTGGCGTCGGGTTGGTTTTCGCCCTCCCCCTGGGGGGGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTATCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑ca < 2:52656/145‑1 (MQ=255) aaaTACTGCACCGACGCGACGGACGAAAATGTTTTCGTTTGTTGGGTTTTCTCCCTCTCCCTGTGGGAGTGGGGGGGGGTGAGGTCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑ca < 2:52697/150‑1 (MQ=37) ccGACGCGCGGGACTAAAATGTATTCTTATGGTGGGTTTTCGCCCCCTCCGTGTGGGAGTGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTga < 2:3814320/150‑1 (MQ=255) ccGACGCGCCGCACGAAAATTTTTTCGTAGGGTTGGTTTCCCCCCTCGCCGTGGGGGAGGGGGCGGGGGTGGGGCCCTCAGCGCGCCCGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTga < 1:2029620/150‑1 (MQ=255) cgacgcgccgAACTAAAATTTTTTGGTTTGTTTGGTTTACCCCCCCCCCGTGTGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTgag < 1:1076144/150‑1 (MQ=255) cgacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACACCCACAACCACACCCACCAAGGCGACGGGGCCCATCGAG‑CACaaaaaaaatg > 1:3029145/1‑143 (MQ=21) cgacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACACCCAAACCCGCGCCCACAAGGGAGAGGGGGCCCAGCGAG‑CCCAAAATTTgag > 1:1624718/1‑150 (MQ=25) cgacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCACCCCAACCCCCGACCCCAACGGCGGGGGGCCCGGTGGTC‑CACAAATATTtag > 1:1917904/1‑150 (MQ=21) gcgacgGATTAAAATGTTTGCGTATGGTTGTTTTGCCCCCTCGCCGTGTGGTAGTGGGCGGGGTTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGat < 2:3686796/150‑1 (MQ=255) cgccgtacgAAAATTTTTTGGTATGGTTGTTTTGCCCCCTCTCCCTGGGGTTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGata < 2:3422178/144‑1 (MQ=255) cggacgAAAATGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATAtct < 2:3241967/150‑1 (MQ=255) ggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCGCCCCCAAACCCAATCCCGCAACGGCGAGGGGACCCATCCAG‑CCCAAAATTTTAGAGaaataat > 2:2874189/1‑147 (MQ=21) ttttCGTATGGTTGTTTTTCGCCCTCCCCGGGGGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTg < 2:1106477/148‑1 (MQ=255) tATTCGTAAGGTTGGTTTTCCCCCTCCCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTg < 1:3464733/150‑1 (MQ=255) tCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 2:2095910/150‑1 (MQ=255) gtttgggtggttTTCCCCCTCTCCCTGTGGGAGCGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 1:255338/143‑1 (MQ=255) tAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAAACCACACCCACAAGGGAGAGGGGACCCAACCAG‑CACAAAATTTTAGAGATATCTTCTTCTGTCTTGTaaaac > 2:3885063/1‑147 (MQ=25) atggttggttTTCGCCCACGCCCTGTGGTAGAGGGCCGGGGTGCGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACaga < 1:2353412/148‑1 (MQ=255) aaGGTTGGTTTTCCCCCACACCCTGTGGGATAGGGCCGGGGTGAGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACaga < 1:3385089/150‑1 (MQ=255) tgtttggttTTCTCCCCCGCCGTGTGGGAGTGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaa < 1:1216689/147‑1 (MQ=255) cggttggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaa < 1:2965978/149‑1 (MQ=255) ggttggttTTCTCCATCTGACGGTGGGAGTGTGCGGGGGTTCGGGCCTCATCGTGCACGTTCACCCTCACGCTAACGGTCTCGCTGTTGGGTGTTGGGTCGGATCGAG‑CACTATTTTTGTTATATATCTTCTTCTGTCTTGTAACagtag < 2:2605181/150‑1 (MQ=255) gttggttCTCCCCCTCCCCGTGGGGGTGCGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaaga < 1:1112359/150‑1 (MQ=255) ttgtttTCCGCCATCTCGGTGTGGTTGGGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACTAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 2:3638093/150‑1 (MQ=255) ttggttGCCCCCCTCGCCCGGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 2:3382571/150‑1 (MQ=255) accccctctccctGTGGTCGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCCCCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaaa < 2:280916/147‑1 (MQ=255) ctccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCTCACCCGAAACCTCTCCCACAAGGGAGAGGGGGCCCCGCGCG‑CACAAAATTTGAGAGATATCATCTTATGTCTTGTAACAGAAGAACACaaaaa > 2:2921547/1‑149 (MQ=25) ctccctcgccctGGGGTTGGGGGCCGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAt < 1:489889/150‑1 (MQ=255) ctctcccgGTGGGAGGGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCggg < 1:1093371/150‑1 (MQ=255) cctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCCAAACCACAACCAAAAGGGGGTGGGGGCCCCTCGCG‑CACAAAATTTTAGAGAAAAATTCTTATGTGTTGTTAAATAAGAACACAAAAAAGGGCgttt > 2:3549957/1‑150 (MQ=12) ccacagggAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCACCCAAACCCACACCCGCAAGGGGGAGGGGGCCGGTCGAG‑CACAAAATTTGATGGCTATGTTATTAAGTGGTTTAACAGAATAACAGAAAAACGGGCgttt > 2:2429892/6‑150 (MQ=255) tgtgGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCGCACCCTAAGCCTCTGCCTCAAGGGTGAGGGGGCCGATCCAG‑GACAAAATTTGTGATTTATCTTCTTCTGTGTTGGGACGGACGAACCGAAAATggggggttttg > 2:2893174/1‑143 (MQ=19) tgGTAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcgc < 1:3140986/150‑1 (MQ=255) tgGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcgc < 2:2956589/150‑1 (MQ=255) ggggAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcgc < 1:3140604/149‑1 (MQ=255) ggAGAGGGCCGGGGTGTGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:2466451/150‑1 (MQ=255) ggAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCTAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 2:292784/150‑1 (MQ=255) gctgtgggCGGGGTTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:334852/145‑1 (MQ=255) agGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAat < 2:261392/150‑1 (MQ=255) ggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCCCACCCAAAACCACACACACAAAGGGGAGGGGGCCCCTAGAGCCCCAAATTTTG‑GATATATATTCATCAGTCTTGTAAACCAAGAACAGAAAAACCGGCGTTTGCGccgggctat > 2:1266197/1‑143 (MQ=255) ccGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 1:3755616/150‑1 (MQ=255) gggggTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 2:1796223/149‑1 (MQ=255) cGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 2:1796233/150‑1 (MQ=255) ggTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 1:305702/150‑1 (MQ=255) ggTGAGGGCATCAGCGCGCACGTGCAACCACACCCAAAACCACAACCGCAAAGGAGAGGGGCCCCCTCGAG‑CCCAAATTTTGAGTGATATATTCTAAATTCTTGTGAAACAAGAACAGAAAATAGGGCTTTTGCGCCTGAAAAtttgggg > 2:2408090/1‑145 (MQ=255) gAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaa < 2:1531354/150‑1 (MQ=255) ggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 2:574477/150‑1 (MQ=255) ggCATCAGCGCGCACGTTCAACCACAACCCAAACCAAACCCACAAGGGAGAGGGGACCCAAACAG‑CACCAAATTTTATAAATAAAATATTAAGTCATTTAAAAGAAGAAAAGAAAAAAGGGCATTTTCGCCGGAATATTGCGGCGaaaaa > 2:2523939/1‑150 (MQ=255) ggCATCAGCGCGCACGTTAACCCACACCCGAAACCACTCCCACAAGGGAGGGGGGACCGATCGAG‑CACAAAATTTTAGAGATATAATATTCAGTCTTTTTAAAGAAGAAAAGAAAAACGGGCTTTTTAGCCTGAATATTGGGGGGaaaaa > 2:970448/1‑150 (MQ=255) ggCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 2:574526/150‑1 (MQ=255) gCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAg < 1:463976/150‑1 (MQ=255) | CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAG > NC_000913/164432‑164728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |