| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4574555 = | 132 (1.210) | 3 (0.030) | 3/264 | NT | 2.4% | pseudogene (637/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| ? | NC_000913 | 4574591 = | 122 (1.170) | pseudogene (673/2937 nt) | yjiV | pseudogene; conserved hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTGTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4574709‑4574555‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaccGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAG > NC_000913/4574591‑4574738 GCTGTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGTGCACGATATTAGTAACGTAAAATGGC < 1:485143/150‑1GCTGTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGC < 1:67721/150‑1GCTGTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGC > 2:1466910/1‑150 TGTCCCTTGGCGACTGTCTGTAAAGGTTATGAGTCGACGACGTCGTCCTTGCAACGAATCTGGGCCGACGCCCTCTTTGCCATCATCACTGGTAAAGTCCTGACAATCCTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCC < 1:772942/150‑1 GTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCGTCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCA > 2:446684/1‑150 GTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCA < 2:1541258/150‑1 GTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCGTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCc > 2:843492/1‑149 gCCCTTGTCGACTGTCTGTAAAGGTGATGAGGCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCAC < 1:1415065/149‑1 CTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGCCTCATCACCTTTACAGACAGTCG > 1:257300/1‑150 AGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGAC > 2:893643/1‑150 ACGGTGGGCACGATATTAGTAACGTAAAATGGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTAACAGACAGTCGACAAG > 2:1623465/1‑150 GCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGGCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCA < 2:959567/150‑1 CCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGTCGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCCAATGGCGGTGCGTATGCAGCAAG > 2:772727/1‑150 CCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGACGGTGCGTATGCAGCAAGAAc > 2:967059/1‑149 GCTGTCCCTTGTCGACTGTCTGTAAAGGTGATGAGTCGACGACCTCGTCCTGGCAACGAATCTGGTCCGACGCCCTCTTTGCCTTCATCACTGGTAAAGTCCTGACAATACTCTAGAACGGTGGGCACGATATTAGTAACGTAAAATGGCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4574709‑4574555‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaccGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAG > NC_000913/4574591‑4574738 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |