| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4574561 | 133 (1.210) | 3 (0.030) | 3/264 | NT | 2.4% | pseudogene (643/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| ? | NC_000913 | = 4574583 | 122 (1.170) | pseudogene (665/2937 nt) | yjiV | pseudogene; conserved hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCCTCGACCGTCAGACGCGCCGTATTGGCGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4574408‑4574561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgggcACGATATTAGTAACGTAAAATGGCCCACCTAATAGTGCACGCCGGAAGGGCTGTTTCCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATAACGCC < NC_000913/4574583‑4574435 CGCCTCGCCCGTCAGACGCGCCGTATTGGCGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACTGAGGCATGAGTGGGATACAGCCCTTCCGGCGTGCACTATTAGGT > 1:237706/1‑150 GCCTCGACCGTCAGACGCGCCGTATTGGCGTTATTAACAATGACATCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTG < 2:24467/150‑1 GCCTCGACCGTCAGACGCGCCGTATTGGCGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTG > 1:1851662/1‑150 CCTCGACCGTCAGACGCGCCGTATTGGCGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGG > 1:825196/1‑150 CCTCGACCGTCAGACGCGCCGTATTGGCGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGG < 2:1521091/150‑1 TCGACCGTCAGACGCGCCGTATTGGCGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGGGC < 1:1742801/150‑1 ATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGGGCACGATATTAGTAACGTAAAATGGCCCACC < 2:89524/150‑1 TTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGGGCACGATATTAGTAACGTAAAATGGCCCACCT < 1:1683455/150‑1 acCAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGTCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGGGCACGATATTAGTAACGTAAAATGGCCCACCTAA < 1:118474/148‑1 GTGGGCACGATATTAGTAACGTAAAATGGCCCACCTAATAGTGCACGCCGGAAGGGCTGTTTCCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATA < 2:927570/150‑1 TGGGCACGATATTAGTAACGTAAAATGGCCCACCTAATAGTGCACGCCGGAAGGGCTGTTTCCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATAA > 1:1379351/1‑150 GCACGATATTAGTAACGTAAAATGGCCCACCTAATAGTGCACGCCGGAAGGGCTGTTTCCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATAACGC > 1:438975/1‑150 GCACGATATTAGTAACGTAAAATGGCCCACCTAATAGTGCACGCCGGAAGGGCTGTTTCCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATAACGC < 2:1453294/150‑1 CACGATATTAGTAACGTAAAATGGCCCACCTAATAGTGCACGCCGGAAGGGCTGTTTCCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATAACGCC < 1:1015433/150‑1 CACGATATTAGTAACGTAAAATGGCCCACCTAATAGTGCACGCCGGAAGGGCTGTTTCCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATAACGCC < 1:1680455/150‑1 CGCCTCGACCGTCAGACGCGCCGTATTGGCGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4574408‑4574561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgggcACGATATTAGTAACGTAAAATGGCCCACCTAATAGTGCACGCCGGAAGGGCTGTTTCCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATAACGCC < NC_000913/4574583‑4574435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |