| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1287084 | 26 (0.240) | 7 (0.070) | 5/238 | NT | 13.4% | noncoding (153/171 nt) | rttR | rtT sRNA, processed from tyrT transcript |
| ? | NC_000913 | 1287557 = | 68 (0.730) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGAC > NC_000913/1286935‑1287231 | gTCGTTGCCTGCGGCAACGCTCTCTCGCTGCCGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGATTGAAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATT > 2:1014916‑M1/1‑150 (MQ=255) tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa > 2:1115873/1‑150 (MQ=255) cGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCtt < 2:1772141/150‑1 (MQ=255) gccGCTCCAGCCGAACCTTCGTCGAAGCTTCTCATCCATCCCCGCATGGGCAGAATATTTGATTGTGTATTCTCTTGAGAGTTCAGGGACTTTTTAAAGTGATGTTGGTGGGGGAAGGATAACTCAGCGCTGCGCGCTTCGCCCTTCggg < 2:75719/148‑1 (MQ=14) ttgTCGAAGCTTATCATCATTCCCCGCATGGGCTGAATATTTGATTGCGGATTCGTTTGTGATTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGAAACg < 2:1677343/148‑1 (MQ=11) ttCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGGTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacctgcggagtggatgccggctgagttactggctggtggcttggggcgctcggg > 2:1227948‑M1/1‑93 (MQ=255) tcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCTACGGTCTCTCGGTgtc > 1:512553/1‑148 (MQ=255) cATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATT < 1:383432‑M1/89‑1 (MQ=255) cATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTagtaccatctaagaccatcacggaagatttactgtctgcaccctttggacgctcgggagcc > 2:746288‑M1/1‑89 (MQ=255) ccTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACACAGAGCTCCGAGCTACGCGCGACAGGTCGTTGCATGCGGCGTAGCTCTGTAGCTGGCCCtg > 2:1403206/1‑149 (MQ=14) tCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAATCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCAACGCTCTCTCGCTGTCGCTCGaa > 2:1748561/1‑149 (MQ=255) gggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCtt > 1:974622/1‑150 (MQ=255) aaTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCATCACCCTTCGGGTCGTTGCCTGAGGCAACGCTCTCTCGCTGTCGCTCGAATCGAACCTTATTCGa > 2:653715/1‑150 (MQ=14) aTTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCGCGAGTCGAACCTTGGTCGAAGCTtctc > 1:965803/1‑150 (MQ=255) tGCGGATTCGTTTGAGACTTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAt < 1:74142/150‑1 (MQ=255) gCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATc > 1:673658/1‑150 (MQ=255) cGGATTCGCTTGAGACTTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATcc < 1:802770/150‑1 (MQ=255) aTTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAATCAGCGCTTCGCGCATCGCCCTTCGGTTCGTTTCCTGTGGCTACGGTCTCTCGCTTGCGCTCGAATCGAACCTTAGTAGAAGGTTCTCAAGCTTc > 1:1305329/1‑150 (MQ=14) cTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttt < 2:1243492‑M1/114‑83 (MQ=255) cTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttt > 1:1243492‑M1/1‑32 (MQ=255) cTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTa < 1:1698686/150‑1 (MQ=38) ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGACGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa < 1:1265088/140‑1 (MQ=21) tGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcata < 1:855672‑M1/150‑123 (MQ=255) gAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtc > 2:903996‑M1/1‑27 (MQ=255) gAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtc < 1:903996‑M1/63‑37 (MQ=255) gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGGCGCGCGAGTCGAGCCTTGGTCGAAGCTTCTCATCCTTCCACGCATGGGCGGAATATTTAATTgg > 2:1873481/1‑149 (MQ=14) aaGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttg < 2:126679‑M1/72‑48 (MQ=255) aaGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttg > 1:126679‑M1/1‑25 (MQ=255) aaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCgg < 2:974622/150‑1 (MQ=39) gTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaa > 2:1301461‑M1/1‑23 (MQ=255) gTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGAt > 1:1036175/1‑150 (MQ=21) aTGGTGGTGGGGTAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCg < 1:1002228/150‑1 (MQ=37) aTGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatagcaaatga > 2:1608713‑M1/1‑20 (MQ=255) tggtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacgggtaaatgctttttactggacagctcccttatcgtgaaacgggccgcataatatcaaaagac > 2:453680‑M1/1‑19 (MQ=255) tggtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatagggaagcggggcgcatcatatcaaatgac > 2:1399249‑M1/1‑19 (MQ=255) ggtggtggGGGAAGGATTACTCAGAGCTTCGAGCTTCGCCCATCTTTTAGATGCATGAGCCAAAGCTCTCTCGCGGCCGCGAGAGTCGAAGCTAGGTAGAAGCTACTCATCCTTAACCGCATTTTCAGAATATTTAATTGCGGATTCggg > 2:33280/1‑148 (MQ=2) gtggtggGGGAAGGATTcgaacctttgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaacccctccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcaaatcaaatgacgc > 1:1663772‑M1/1‑17 (MQ=255) gtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgct > 1:1118585‑M1/1‑17 (MQ=255) gtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgct < 2:1118585‑M1/111‑95 (MQ=255) tggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcg < 2:298297‑M1/150‑135 (MQ=255) ggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgc > 1:1775248‑M1/1‑15 (MQ=255) ggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTTCGGATTGGTTggg > 2:1448538/1‑150 (MQ=255) gtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa < 2:673658/150‑1 (MQ=40) gggggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgc < 2:22380‑M1/150‑139 (MQ=255) gggAAGGCTTcgaaccttcgaagtcgatgactgcagatttacaggctgctccctttttccgctctggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctg < 2:1337889‑M1/150‑141 (MQ=255) gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctg > 2:1535347‑M1/1‑10 (MQ=255) gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaacc < 1:428477‑M1/71‑62 (MQ=255) gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaacc > 2:428477‑M1/1‑10 (MQ=255) gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacactctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctg > 1:1347308‑M1/1‑10 (MQ=255) gggAAGGAATcgaaccttcgaagacgatgacttcagatttacagtctgccccctttggtcgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctg < 2:1331472‑M1/150‑141 (MQ=255) ggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGCGTGGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGttg > 1:1033903/1‑149 (MQ=255) ggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTa > 1:682894/1‑127 (MQ=35) ggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTa < 2:682894/127‑1 (MQ=35) gatggattagaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacgggggaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgta > 2:1436922‑M1/4‑8 (MQ=255) gaaggttcgaatccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgta > 2:474960‑M1/6‑7 (MQ=255) ccgactACGCAGCGCTGCGCGCTTCTTCTTTCGGGGCGTTGCCTGCCGCAACGCTCGAGCGGTGTCGCGAGAGCCGAAGCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg < 1:608133/145‑1 (MQ=14) aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaa > 1:992532‑M1/1‑6 (MQ=255) aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg < 2:1036175/150‑1 (MQ=255) ccaTTACTCAGCGCTGCGCGCTTCGCCCTTCCGGTCGCTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTCGTCGAATCTTCTCATCCTTCCCCGCTTGGGCATAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg < 2:965803/148‑1 (MQ=14) gATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctccct < 2:1164497‑M1/102‑99 (MQ=255) gATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctccct > 1:1164497‑M1/1‑4 (MQ=255) gATTcgaaccttcgaagtcgatgacggcagatttacagtctgctcccattggccgctcgggaaccccaccccggggtaatgctttttaatggcctgctcccttatcgggaagcgtggcgcatcatatcaaatgacgcgccgcgggaaagg > 2:1386868‑M1/1‑4 (MQ=255) gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTg < 2:883482/81‑1 (MQ=33) gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTg > 1:883482/1‑81 (MQ=14) aTTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtg > 1:1007698‑M1/1‑3 (MQ=255) | GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGAC > NC_000913/1286935‑1287231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |