New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4568311 =	140 (1.170)	3 (0.030)	3/266	NT	2.3%	coding (209/1233 nt)	mdtM	multidrug efflux system protein
	?	NC_000913	4568374 =	117 (1.020)					coding (146/1233 nt)	mdtM	multidrug efflux system protein
Rejected: Frequency below/above cutoff threshold.

ATTTTGTATGACTTTGCTGCGTATCTGTCGACGGATCTGATCCAGCCTGGGATCATTAATGTGGTACGTGATTTTAATGCCGATGTCAGTCTGGCCCCTGCTGCCGTCAGTCTCTATCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4568465‑4568311 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA  >  NC_000913/4568374‑4568521                                                                                                                                                                                                                                                                                                                 ATTTTGTATGACTTTGCTGCGTATCTGTCGACGGATCTGATCCAGCCTGGGATCATTAATGTGGTACGTGATTTTAATGCCGATGTCAGTCTGGCCCCTGCTGCCGTCAGTCTCTATCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTG                                                                                                                                                           >  2:1562534/1‑150   TTTGTATGACTTTGCTGCGTATCTGTCGACGGATCTGATCCAGCCTGGGATCATTAATGTGGTACGTGATTTTAATGCCGATGTCAGTCTGGCCCCTGCTGCCGTCAGTCTCTATATTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGG                                                                                                                                                         >  2:373360/1‑150     TGTATGACTTTGCTGCGTATCTGTCGACGGATCTGATCCAGCCTGGGATCATTAATGTGGTACGTGATTTTAATGCCGATGTCAGTCTGGCCCCTGCTGCCGTCAGTCTCTATCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGC                                                                                                                                                       <  2:248922/150‑1      GTATGACTTTGCTGCGTATCTGTCGACGGATCTGATCCAGCCTGGGATCATTAATGTGGTACGTGATTTTAATGCCGATGTCAGTCTGGCCCCTGCTGCCGTCAGTCTCTATCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGCC                                                                                                                                                      <  1:35366/150‑1      GTATGACTTTGCTGCGTATCTGTCGACGGATCTGATCCAGCCTGGGATCATTAATGTGGTACGTGATTTTAATGCCGATGTCAGTCTGGCCCCTGCTGCCGTCAGTCTCTATCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGCC                                                                                                                                                      <  1:951815/150‑1      GTATGACTTTGCTGCGTATCTGTCGACGGATCTGATCCAGCCTGGGATCATTAATGTGGTACGTGATTTTAATGCCGATGTCAGTCTGGCCCCTGCTGCCGTCAGTCTCTATCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGCC                                                                                                                                                      >  2:35366/1‑150      GTATGACTTTGCTGCGTATCTGTCGACGGATCTGATCCAGCCTGGGATCATTAATGTGGTACGTGATTTTAATGCCGATGTCAGTCTGGCCCCTGCTGCCGTCAGTCTCTATCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGCC                                                                                                                                                      >  2:951814/1‑150                                                                                         GTCTGGCCCCTGCTGCCGTCAGTCTCGATCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGCCAGACTGAATTCGGCATTAAAATCACGTACCCCATGAATGATCCCAGGCTGGCTCATAGCCGTCGACAGATACGCGGCAAAGTC                                                                   >  1:1448784/1‑150                                                                                             GGCCCCTGCTGCCGTCAGTCTCTATCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATAC                                                               >  2:1362640/1‑150                                                                                              GCCCCTGCTGCCGTCAGTCTCTATCTTCATGGCGGTATGGCGTTACAGTGGCTGCTGGGGCCAGCCTGACATCGGCAGTAATATCACGTACCACATTAATGATCCCCGGCTGGATCAGATCCGACGACAGATACCCAGCTAAGTCATACA                                                              >  1:125794/1‑150                                                                                                                                                      GGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCACCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC      >  2:46598/1‑150                                                                                                                                                        GGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGCTACGCAGCAAAGTCATACAAAATCACCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT    >  1:1044121/1‑150                                                                                                                                                         GCCAGACTGACATCGGCATTAAAATCACGTACCACATTTATGATCCCAGGCTGGATCAGATCCATCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCTTA   <  2:1819315/150‑1                                                                                                                                                          CCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCAGGGCGGGTAAAAAAACGTGGCATAA  >  2:1899058/1‑150                                                                                                                                                                                                                                                                                                                 ATTTTGTATGACTTTGCTGCGTATCTGTCGACGGATCTGATCCAGCCTGGGATCATTAATGTGGTACGTGATTTTAATGCCGATGTCAGTCTGGCCCCTGCTGCCGTCAGTCTCTATCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4568465‑4568311 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA  >  NC_000913/4568374‑4568521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.