| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,351,007 | Δ1 bp | 55.2% | coding (2019/2337 nt) | arcB ← | sensory histidine kinase ArcB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,351,007 | 0 | A | . | 55.2% | ‑2.0 / 53.5 | 29 | coding (2019/2337 nt) | arcB | sensory histidine kinase ArcB |
| Reads supporting (aligned to +/- strand): ref base A (6/6); new base . (9/7); total (15/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.07e-01 | |||||||||||
TTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGAACAGAAAGCGGCTTACTCA > NC_000913/3350873‑3351149 | gtctGTCCTTCCTCAACAACGCCTGTTTGATCCGGCGCCGTCAGATTCGGCTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTGACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTc < 2:71055/140‑1 (MQ=255) ttcctCAACAATGCCTTTTTTATACTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCAACTACTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACACGTTCGAGATACAGTCCAAGAATgg > 2:354363/1‑143 (MQ=255) tCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAata > 1:576522/1‑143 (MQ=255) gCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGGTTCGGACTTACAATTTCGAG‑TCCTGTACCAGCATAGGAAGAGCGAGCaa > 2:80189/1‑143 (MQ=255) ttgtttATCCTGCGCCGTCATATTCGCCTCCAGCACGCTGACATCGCCCGGCATCATCTTCTCAAACACCGCTATCCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGCG‑TACTGTGCCAGCATGGGAATATCGAGCAATGc < 1:757010/140‑1 (MQ=255) tATCCTGCGCCCTCAGATTCGCCTCCAGCCCGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTg < 2:2254/143‑1 (MQ=255) ccTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGAt < 1:429717/143‑1 (MQ=255) gcgcCGTCAGATTCGACTCCAGCCCGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTAc < 1:18368/143‑1 (MQ=255) tgcgccTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCtcttc < 1:271452/138‑1 (MQ=255) tCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCtcttct < 1:65111/143‑1 (MQ=255) aCTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACGCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTGCTCTtgtggc > 1:361613/1‑141 (MQ=255) tCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCCATGCTTCTGAGTTACCGATCTCTTCTgtcgtc > 2:534011/1‑143 (MQ=255) tGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTActc > 2:631463/1‑143 (MQ=255) tGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGGGATCAGCTTCGGTCCTACAAGATCGAGATACTGTTCCAGCATGTGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTActc > 2:330705/1‑143 (MQ=255) aCATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATAGCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTctcc < 2:481869/143‑1 (MQ=255) aTAGCCCGGCATCGTCTGCTCCAACACCGCTACCCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TCCTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTctcctc < 2:498417/143‑1 (MQ=255) tAGCCCGGCATCATCTTCTCATACCCCGCTAGCCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGCTACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTctcctc < 2:70295/143‑1 (MQ=255) catcccGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCtca < 2:528230/140‑1 (MQ=255) catcatCTTCTCACACACCCCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCt < 2:615639/143‑1 (MQ=255) aaCACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATAATCCTGGGTATCCCAGAAt > 1:223423/1‑143 (MQ=255) cGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCt > 1:678504/1‑143 (MQ=255) cGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGACTTTCtt > 2:154763/1‑143 (MQ=255) cGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATcg > 1:660144/1‑143 (MQ=255) gTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTGATGATTTACAGTCCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGAATCCCAGAATTTAATGAACATcgc > 2:54685/1‑143 (MQ=255) cTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGAACAGaa > 2:234055/1‑143 (MQ=255) tACAAGTTCGAG‑GACTGCTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGAACAGAAAg < 2:421435/143‑1 (MQ=255) aaGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGAACAGAAAGCgg > 2:809934/1‑143 (MQ=255) aGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGAACAGAAAGCgg < 1:575312/143‑1 (MQ=255) ttCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGCGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGAACAGAAAGCGGcct > 2:188172/1‑141 (MQ=255) aTACTGTTCCCGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCGTCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGAACAGAAAGCGGCTTACTCa < 2:816650/143‑1 (MQ=255) | TTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGAACAGAAAGCGGCTTACTCA > NC_000913/3350873‑3351149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |