New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 228744	19 (0.450)	5 (0.120)	4/252	NT	21.6%	intergenic (+82/‑12)	rrlH/rrfH	23S ribosomal RNA/5S ribosomal RNA
	?	NC_000913	= 4040481	NA (NA)					intergenic (+58/‑36)	rrlA/rrfA	23S ribosomal RNA/5S ribosomal RNA

ATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGG  >  NC_000913/4040471‑4040623           |                                                                                                                                               aTACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGGAGTGTGGGGTCTCCTCGTGc            >  1:484579/1‑143 (MQ=17)   aCAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGATTTTGTCTGGTGGTAGTAGTGCGGTGGTCCCACCTGACCCCAAGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCga          <  1:681208/143‑1 (MQ=11)   aCAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAGTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCga          <  2:399735/143‑1 (MQ=17)      ccttAAACCAGACCGCAGACGCCGTCTCATAAAACAGAATTCGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGagag       <  1:13397/141‑1 (MQ=11)       aTTATATCAGAACGCAGAAGCGGTCTGATAAAACAGTATTTGCCTGGCGGCAGTAGGGCGGTGGTCCCACCTGTCCTCATGCCGAACTCAGAAGTGAAACGCCGTAGCGTCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGt      <  2:451958/143‑1 (MQ=11)        ttAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGCACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGAGTCTCCTCATGCGagagga     >  2:245545/1‑141 (MQ=12)        ttAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGGAGCGCCGATGGTGGTGTGGGGTCTCCTCATGCGAGAGTa     >  2:300105/1‑143 (MQ=17)         tAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAg    <  1:233713/143‑1 (MQ=32)           aaTCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGCAggg  >  2:723987/1‑143 (MQ=17)           |                                                                                                                                               ATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGG  >  NC_000913/4040471‑4040623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.