| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,323,330 | C→T | 53.0% | intergenic (+79/‑117) | atoC → / → atoD | DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,323,330 | 0 | C | T | 53.0% | 4.5 / 41.0 | 44 | intergenic (+79/‑117) | atoC/atoD | DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base C (11/10); new base T (9/14); total (20/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.59e-01 | |||||||||||
CATCAGTCGCCGTGCATTGATGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAATTGATGACA > NC_000913/2323188‑2323467 | cATCAGGCGCCGTGCATTGGTGTATACACTCCAGGACTACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATc < 2:791827/143‑1 (MQ=255) tCGCCGGGCATTGATGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAAttt < 1:438657/143‑1 (MQ=255) tGCATTGATGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCACTTTATCACt > 2:527364/1‑143 (MQ=255) gATGTATAAACTACAGGAATACGGTATCGATCAGGCGGATGTATAACACTAAAACTTGATATGCAGAAATTTGCACAGTGCGCAATTTTCTGAATAGTCGATAATTTTTATTATAAATCACAATTAAACTTATACCGTAatat > 2:670401/1‑143 (MQ=255) tGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTGCTTATAAATCCCCATCCAATTTATCCCTTCATATTc < 1:532360/143‑1 (MQ=255) tGTATAAACTCCAGCAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTc < 1:542328/143‑1 (MQ=255) ataAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAAt > 1:5222/1‑143 (MQ=255) taAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATCTTCAAtt > 1:527119/1‑143 (MQ=255) cAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGCTaaa > 1:594336/1‑143 (MQ=255) ggAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATa > 1:492999/1‑143 (MQ=255) gAATACGGTATCGATCCGGCGGATGTATAACACCGAAACTTGGTGTGCAGAAATGTGCACCGTGCGTACTTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATaa < 1:642756/143‑1 (MQ=255) aCGGTAGCGATGCGGCGGATGTATAACACCAAAAGTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTaa < 1:607518/143‑1 (MQ=255) cGGTATCGATCCGGCGGATGTCTAACTCCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTaaa < 1:733954/143‑1 (MQ=255) tATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATcc > 1:315603/1‑143 (MQ=255) cGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCaat < 2:531008/143‑1 (MQ=255) tCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCaataat < 2:336220/143‑1 (MQ=255) ggcggATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTCGTTAAATAACTAAATCCAATAAtctc > 2:213036/1‑143 (MQ=255) ggATGTATAGCACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAACCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCAtt < 1:780206/143‑1 (MQ=255) tGTATCACATCAAATCTTGCTATGCAAAGATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTg < 2:437499/143‑1 (MQ=255) ccAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTcccc > 2:526270/1‑143 (MQ=255) accccTTCCTATGCAGAACTCTGCACAGTGCGCCATTTTCTGCATAGCCGCTCATCCTCCTTACAAATCCCCATCCAATTTATCCCTTCACATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCtt < 1:96074/139‑1 (MQ=255) tcTTGCTATGCAGAAATTTGCACAGTGCGCAATGTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCt < 2:565098/142‑1 (MQ=255) ggCTATGCAGAAAATTGCGCACAGTGCAAATTTCTGCATAGCCGCTCATTGTCCTTATAAATCACCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATACAATAATCTCATTCTGGCACTCCGATTGCGAtt > 2:573075/2‑143 (MQ=25) gCTATGCAGAAAATTGCGCACTGTGCAAATTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTGAAATAACTAAATCCAATAATCTCATTATGGCACTCCCCTTGCTATTg > 2:565660/1‑143 (MQ=38) cAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGAc > 1:302418/1‑143 (MQ=255) aGAAATCTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACt < 1:313615/143‑1 (MQ=255) ttGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTAccc > 1:472675/1‑143 (MQ=255) cgcAACTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATGAGTGAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGgtgt < 2:167099/143‑1 (MQ=255) gcAATTTTCTGCATAGCCGCTCATTCTCCGTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTa < 2:540953/143‑1 (MQ=255) cAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATATCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTAt < 2:329469/143‑1 (MQ=255) cAATTGTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTAt < 2:218459/143‑1 (MQ=255) aaTTGTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATg < 1:592866/143‑1 (MQ=255) tCTGCATAGCCGCTCATTTTCCTTATAAATCCCCATCCAATTTATCCCTTCTTATTCAATTACTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAaga < 1:414735/143‑1 (MQ=255) gCTCATTCTCCTTATATCTCCGCATTCAACTTATCCCTTCATATGCAATTAGTTAAATAAGTAAATCCAATCATCTCACGCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATaaaaaa < 2:494641/143‑1 (MQ=255) aTTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGAGATAAAAAATgcc > 2:64268/1‑141 (MQ=255) aTTCTCATTATCAATCTCCGTCCAATTTATCCCTTCATATTCAATTAGTGATATAAATAAAACTAATAGTCTCATTCTGGCACTCCCCTTTCGATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGaa < 2:202892/143‑1 (MQ=255) ttCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATCCAACTAGTTAAATAACTAAATCCAATAATCGCATTCTGGAACTCCCCGGGCTATTGCCTGACCGGACCGACATCGGGGGATGCAAGAGGGATAAAAAATGaaa < 2:810077/143‑1 (MQ=255) tcCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTAGAACTCGCCTTGCTATTGCATGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACa > 2:715286/1‑143 (MQ=255) tcCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACa > 1:98687/1‑143 (MQ=255) ccTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGGTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCCAGAGGGATAAAACATGCAAACaa > 1:768097/1‑143 (MQ=255) tataAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAACAAAAGAAAACAAAAt > 2:425821/1‑143 (MQ=255) ataAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAAtt > 1:778763/1‑143 (MQ=255) aaaTCACCATTCAATGTATCCCTTCATATTCAATTCGTTAAATAACTAAATCCAAGAATCTCATTCTGGCACTGCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAATtga < 2:592527/143‑1 (MQ=255) aaTCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAATtgat < 1:452007/143‑1 (MQ=255) cccATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAATTGATGACa > 1:825673/1‑143 (MQ=255) | CATCAGTCGCCGTGCATTGATGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAATTGATGACA > NC_000913/2323188‑2323467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |