Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase subunit beta |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,184,543 | 0 | C | A | 100.0% | 125.3 / ‑6.7 | 41 | P1100Q (CCG→CAG) | rpoB | RNA polymerase subunit beta |
Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (23/17); total (23/18) | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAA > NC_000913/4184406‑4184673 | ggCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTgg < 1:219079/143‑1 (MQ=255) ggTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCg > 2:610468/1‑143 (MQ=255) ggTTAAACGCCGTATCCAGCCTGGAGACAAGATGGCAGGTCGTCACGGTAACAAGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCg > 2:200199/1‑143 (MQ=255) ttAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTa > 1:401489/1‑143 (MQ=255) tAAGCGCCGTATCCAGCCCGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGT‑GTAATTTCTAAGATCAGCCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTAc < 2:524117/143‑1 (MQ=255) tAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTACCTACGGTGGTCAATT‑TAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACCGAACCAGCTGGGCGTAc < 1:378222/143‑1 (MQ=255) aaCGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCg > 1:622446/1‑143 (MQ=255) cGCCGTACCCAGCCCGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGT‑GCAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGtc < 1:70393/143‑1 (MQ=255) cAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGaa < 1:578888/143‑1 (MQ=255) tGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCg < 1:193790/143‑1 (MQ=255) tGACAAGATGGCAGGTCGTCACGGTAACAAGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTc < 1:38628/143‑1 (MQ=255) ggCAGGTGGTCACGGTAACAAGGGT‑GTAATTTCTAAGCTCAAGCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACAGCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCg < 2:78013/143‑1 (MQ=255) aGGTCGTCACGGTAACAAGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCAGTCAGATCCTCGaaa > 2:510680/1‑143 (MQ=255) tcACGGTAACAAGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGCCAGATCCTCGAAACCCAcc > 1:417726/1‑143 (MQ=255) aaGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGc > 2:424786/1‑143 (MQ=255) aaGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGAATgcc > 2:45684/1‑141 (MQ=255) ggT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCCGGGTATGGCTGc > 2:294637/1‑143 (MQ=255) t‑gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGa < 1:753389/143‑1 (MQ=255) tAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTGTGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGaaa > 1:214466/1‑143 (MQ=255) aaTTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAg < 2:378004/143‑1 (MQ=255) aTTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGATAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTTTGAGCATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCggaggg > 1:466112/1‑138 (MQ=255) tCTAAGATTAACCCGATCGAAGATATGCCTGACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTAt < 1:223474/143‑1 (MQ=255) ccaCCCCACCGAAGATATGCCTTACGATGAAAACGGTACCCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACa < 2:51972/141‑1 (MQ=255) cccGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCCGATCCTCGAAACCCACCTGGGAATGGCTGCGGAAGGTATCGGCGACaaca > 2:276146/1‑141 (MQ=255) cccGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGCACGGCTGCGAAAGTTATAGGCGACAAGa > 1:798703/1‑143 (MQ=255) aTCGAAGATATGCCTTACGATGAAAACGGTACGCAAGTAGACTTCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGGATTTCGGTTAGAGCCTCGAAACCCACCTGGGGATGTCTGCGCAAGGTTTAGGCGGCaaaactag > 2:15326/1‑137 (MQ=255) cctACGATGAAAACGGTGCGCCGGTAGACATCGCACGGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGAGCCTCGCAACCCACCTGTGTATGTCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGaaa < 2:673091/141‑1 (MQ=255) cTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGaaa > 1:801307/1‑143 (MQ=255) cTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGAGCAGCGCCATGCGGaaa > 2:260682/1‑143 (MQ=255) ttACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTggagc > 1:654709/1‑139 (MQ=255) ttACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACAGCGGTCAGGTCCTCGAAACCCAGATGGGTATGGACCCGAAAGGTATCGGCGGCAAGGTCAACGCCATGCTGAAAc > 1:596876/1‑143 (MQ=255) gAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAgcagca < 1:787470/143‑1 (MQ=255) gaaaCGGTACGCCGGTAGACATCGTACGGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaa < 1:5011/142‑1 (MQ=255) tACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTcg < 2:401489/143‑1 (MQ=255) tACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACACACCTGAGTATGGCTGCGAAAGGTATCGGCGACAGGACAAACGCCATGCGGAAGCAGCCGCGAGCAGAcg > 2:22621/1‑143 (MQ=255) gTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCCTGATCACACAGCAGCAAGAAGTCGCCAAACt > 2:564871/1‑143 (MQ=255) tAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGGAACTg > 1:454519/1‑143 (MQ=255) aGACATCGTACTGAACCAGCTGGGCGTACCGTCGCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgc < 1:406115/143‑1 (MQ=255) tgcATCGTGCTGAAGCAGCTGGGCGTACCGCCTCGTATGAACAGCGGTAAGATGCTCGGAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcg < 2:824871/141‑1 (MQ=255) aTCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCCTGCTGAACCAGCAGCAAGAAGTCGCGACACTGCGCGa > 1:128986/1‑143 (MQ=255) tCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCAACCTGGGTATGGCTGCGAAAGGTATGGGCGACAAGAGCAACGCCATGCAGAAACAGAAGCAAGAAGACGAGCAACTGCGCGag > 1:332354/1‑142 (MQ=255) | GGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGT‑GTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAA > NC_000913/4184406‑4184673 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |