Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,196,235 | C→A | 29.3% | intergenic (‑136/+97) | thiC ← / ← rsd | phosphomethylpyrimidine synthase/regulator of sigma D |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,196,235 | 0 | C | A | 29.3% | 73.7 / 28.6 | 54 | intergenic (‑136/+97) | thiC/rsd | phosphomethylpyrimidine synthase/regulator of sigma D |
Reads supporting (aligned to +/- strand): ref base C (17/21); new base A (10/6); total (27/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.72e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 |
CAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCACCAGCAGAAT > NC_000913/4196093‑4196376 | cAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATc > 2:155543/1‑143 (MQ=255) aCATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGATGTGGGATGGGGCAAGAGACGATAGGCGAGGGTTCCACACCATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCg > 1:604665/1‑143 (MQ=255) cATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATcccaa > 1:297081/1‑141 (MQ=255) aTAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGaa < 1:221655/143‑1 (MQ=255) cTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAACAATTTACTGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATaaa < 1:599673/143‑1 (MQ=255) agtCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCTATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACgg < 1:271012/141‑1 (MQ=255) cAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGCTGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATACCGAATAAACGGtctc > 1:33368/1‑143 (MQ=255) aGTTGAGGACGTGGCGTGTCAGACGACGGAGGAAGCAAGAGGCGATCGCCGCAGGGGCGATGCGATAGCAGATTAGCTCTCGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATACCGAATAAACGGTCTCAGCCa < 2:785233/143‑1 (MQ=255) aGTTACGTACGTGGCTTCTCAGACGACGGATGACGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTCACTATTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCa < 1:518637/143‑1 (MQ=255) aGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAAGTTCCGCGGATCCCGAATAAACGGTCTCAGCCa > 2:686741/1‑143 (MQ=255) ggACGTGGCTGGTGAGGCGACGGGTGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATGAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAg < 2:672080/143‑1 (MQ=255) cGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCa < 2:566217/143‑1 (MQ=255) gTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTAATAGCCTGATCAGGTTCCGCGGAACCCGAATAAACGGTCTCAGCCAGTTAAGGCAc > 2:759236/1‑143 (MQ=255) ttGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGGTCCGCGGATACCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCgc > 2:814836/1‑142 (MQ=255) atctCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGGATTAGCCTGATCAGGTTCCGCGGATACCGAATAAACGCTCTCACCCAGTTACGGCCCCCCGa > 2:549713/4‑143 (MQ=255) tGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGAc < 2:514483/143‑1 (MQ=255) tCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACaa < 1:329035/143‑1 (MQ=255) gacgacGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGaa > 1:331652/1‑143 (MQ=255) acgacgGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGaaa > 1:683559/1‑143 (MQ=255) aGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGCTACGGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCa > 2:713035/1‑143 (MQ=255) aaGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATACCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAAt > 1:742508/1‑143 (MQ=255) agaCGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAACTggg > 1:541601/1‑143 (MQ=255) aCGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGATCCGCGGATCGCGAATAAACGGTCTCATCCAGTTAAGGCACTACGACAAGACATTAGCCCCGCCAATGGGGc > 1:152854/1‑143 (MQ=255) gATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGGATTAGCCTGATCAGGTTCCGCGGATACCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAAAGGGGCag > 2:85936/1‑142 (MQ=255) aTCGCCGCATGGGCGATGCGATAGAAGAGGAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCAtt < 1:26584/143‑1 (MQ=255) ccgcAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAAt < 1:321118/143‑1 (MQ=255) ccgcAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATACCGAATACACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAAt < 1:309261/143‑1 (MQ=255) ccgcAGGGGCGATGCGATAGCAGAGTAACTCTCGTTCCGTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAAt < 2:813498/143‑1 (MQ=255) ggggCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCGCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTaaa > 1:601692/1‑143 (MQ=255) cAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATACGCGGTCCCCGCCAGTTCAGGCACTCCGACCAGAAATCAGCCCCGCCCGTGGGGCCGTCAACGTAACTCACGCGTACACAgc > 2:750928/1‑143 (MQ=255) aGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAACTTAGCCCCGCCAATGGGGCGCTGAATGTAAATTACGCGGTCACcgcg > 1:322087/1‑143 (MQ=255) gATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAgcgc > 1:426429/1‑143 (MQ=255) aTTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCCTTGAATGTAAATTAAGCGTTAACCACGCa > 2:159327/1‑143 (MQ=255) aTTAACTCGTGCTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCa < 1:683761/143‑1 (MQ=255) aaCGCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGaa < 1:2306/143‑1 (MQ=255) ttCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATCACGCGTTAACAGCGCAGAACTCGAGCa > 2:249822/1‑143 (MQ=255) ttCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATACCGAATACACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCCTTGAATGTAAATTACGCGTTACCAGCGCAGAACTACAGCa > 2:552804/1‑143 (MQ=255) ttCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATACCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCa > 2:547090/1‑143 (MQ=255) tCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAg < 1:218410/143‑1 (MQ=255) ccTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATACCGAATAAACGGTCTCAGCCAGTTAAGGCACTACGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGa > 2:97797/1‑143 (MQ=255) cTTCGCAGGTATTAGCCTGATCAGGTTCCGCGTATACCGAATCAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGAt < 1:211199/143‑1 (MQ=255) cTTCGCAGGTATTAGCCTGATCAGGTGCCGCGGATCCCGAATGAACGGACACAGCCAGTTAAAGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCCTTGAATGTAAACTACGCGCTCACAGCGCAGAACTCAAGCacgct > 2:572017/1‑139 (MQ=255) ttCGCAGGTATTAGCCTGCTCAGGTTCCGCGGATACCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATGAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATg < 1:313224/143‑1 (MQ=255) gCAGGTATTAGCCTGATCAGGTTCCGCGGATACCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGttt < 2:742508/143‑1 (MQ=255) ttAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACgcgg > 1:721180/1‑143 (MQ=255) gtAGCCTGGTCAGGTCCCGCGGCTCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTAAAAGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACgcgg < 1:646722/142‑1 (MQ=255) ccggATCAGGTCCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCAGTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACgcgggcgg < 2:158912/140‑1 (MQ=255) tGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGgcggcg < 2:426429/143‑1 (MQ=255) tGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGgcggcg > 2:274269/1‑143 (MQ=255) cAGGTTCCGTGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAACGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCaa < 2:387246/143‑1 (MQ=255) cAGGTTCCGCGGATCCCTAATAAACGGGCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCCGCCCGCGTCaa < 2:79133/143‑1 (MQ=255) gggTTCCGCGGATCCCGAATAAACGGTGTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAg < 2:448238/142‑1 (MQ=255) gTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCa > 2:678106/1‑143 (MQ=255) gTTCCGCGGATACCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCa > 2:629862/1‑143 (MQ=255) ttCCGCGGATACCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCAc < 1:155543/143‑1 (MQ=255) gATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAAGGGGGCATTGAAGGTAAATGACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCACCAGCAGa < 1:669650/143‑1 (MQ=255) ccccGCATAAGCTGTCTCAGGCGGGTCAGGAAGCCCGACAAGAAATTGCCCCCGCAACTGGGGCATTGAATGTAAATTACGCGTTGACAGCGCAGAACGCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCACCAGCAGAAt < 2:456574/142‑1 (MQ=255) | CAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCACCAGCAGAAT > NC_000913/4196093‑4196376 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |