Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,351,007	Δ1 bp	coding (2019/2337 nt)	arcB ←	sensory histidine kinase ArcB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,351,007	0	A	.	100.0%	163.3 / NA	38	coding (2019/2337 nt)	arcB	sensory histidine kinase ArcB
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (18/20);  total (18/20)

TATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGAACAGAAAGCGG  >  NC_000913/3350874‑3351141                                                                                                                                      |                                                                                                                                       tacgTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCa                                                                                                                              <  2:746399/140‑1 (MQ=255)   tGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTACCCCGTCGGGGGTACGCTTCGGCACTACCAGCTCGAG‑TACTGTTCCAGc                                                                                                                            >  2:36106/1‑143 (MQ=255)     tccttcctCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCAt                                                                                                                          >  2:383568/1‑143 (MQ=255)      cgtccctCACCAATGACTTTTTTTTCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCACAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATg                                                                                                                         <  1:475164/139‑1 (MQ=255)      ccttcctCAACGACGCCTTTTCTATCCGGCGCCGTCAGATTCGACTCCAGCCCGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGGTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATg                                                                                                                         <  1:291979/143‑1 (MQ=255)      ccttcctCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACCTAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGCG‑TCCTGTTCCAGCATg                                                                                                                         >  1:341623/1‑143 (MQ=255)      ccttcctCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATg                                                                                                                         >  2:402593/1‑143 (MQ=255)      ccttcctCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATg                                                                                                                         >  2:490131/1‑143 (MQ=255)       cttcctCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCGCGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATgg                                                                                                                        <  1:554425/143‑1 (MQ=255)        ttcctCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGAGCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATggg                                                                                                                       >  1:74352/1‑143 (MQ=255)              aacaaTGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATc                                                                                                                 <  1:383568/143‑1 (MQ=255)                   tGCCTTCTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCGTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCa                                                                                                            <  1:590189/143‑1 (MQ=255)                      cTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATTGGAATATCGCGCAATg                                                                                                         >  1:505449/1‑143 (MQ=255)                          tttATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTc                                                                                                     <  1:657146/143‑1 (MQ=255)                               cccgcgcCGTCAGATTCGACTCCCGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGAtt                                                                                                <  1:539134/140‑1 (MQ=255)                                        tCAGAGTCGCCTCCAGCACGCTGACATAGCCCGGCATCATCTCCTCAAACCCCGCTAACCCGTCGGTGATCAGCGTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTtct                                                                                       <  1:440440/143‑1 (MQ=255)                                              tCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTGCTGTTCTCTTCTg                                                                                 >  1:559893/1‑143 (MQ=255)                                                gACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGCG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGACTTCCTTCTCTCTTCTgtc                                                                               >  1:47120/1‑143 (MQ=255)                                                gACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTgtc                                                                               <  1:846680/143‑1 (MQ=255)                                                gACTCCAGCACGATGACATAGCCCGGCAGCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGCGCAATGATTCTGATTTGCTGTTTGCTTCTgta                                                                               >  1:129720/1‑142 (MQ=255)                                                    ccAGCACGCTGACACAGCCCGGCATCGTCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATATACTGTTCTCTTCTGTCGTCa                                                                           <  2:497838/143‑1 (MQ=255)                                                                         gCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCt                                                      <  2:428097/143‑1 (MQ=255)                                                                          catcatCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCTAG‑TACTGTTCAAGCATGTGAATATCGAGCGATGCGTCTGATTTGCTGTTCTCGTCTGTCGTCACCGACCTCTCCTACTCATCCta                                                     >  2:519271/1‑142 (MQ=255)                                                                            tcatcTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATCTCGAGCAATGCCTGTGATTTACTGTTCTCTTATGTCGTCACCGTACTCTCCTCCTCAGCCAgga                                                   >  2:364124/1‑142 (MQ=255)                                                                                           ccGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCt                                    <  1:758401/143‑1 (MQ=255)                                                                                                   ccGTCGGTGATCAGCTTCGGTCCCACAAGTGCGAG‑TACTGGTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGatcatc                            <  1:716688/143‑1 (MQ=255)                                                                                                    cGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGCTTTACTGTTCTCTTCTGTCGTCACCGGACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATcg                           >  2:863127/1‑143 (MQ=255)                                                                                                    cGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATcg                           <  2:379963/143‑1 (MQ=255)                                                                                                    cGTCGGTGACCAGCTTCGGTCCGACACGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATcg                           <  2:269014/143‑1 (MQ=255)                                                                                                             tCAGCTTCGGTCCTACAAGTTCGTG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAgcg                  <  2:694349/143‑1 (MQ=255)                                                                                                              cAGCTTCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTCCCCTTCTGTCGTCACCGTAATCTCCTCATCATCCCGGGTATCCCAGAATATCTAGATCATCCCGCTTaaccc                 >  2:646758/1‑139 (MQ=255)                                                                                                                   tCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGaa            <  1:490131/143‑1 (MQ=255)                                                                                                                   tCGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGaa            <  1:402593/143‑1 (MQ=255)                                                                                                                    cGGTCCTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATACAAGAACTTCTTGTTCATCGCGGTTAGCGCCGGAAc           >  1:230188/1‑143 (MQ=255)                                                                                                                         cTACAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGAACAGaaa      <  2:590514/143‑1 (MQ=255)                                                                                                                          tACAAGTTCGAG‑TACTGTTCCAGGATGGGAATATTGAGCAATGCTTCTGGTTTACTGTTCTCTTCTGTCGTCACCGTAATATCCTCATAATCCTGAGTATCTCAGAAATTCTTGATCATCGCGGTCAGCGCCGGCACAGAAAg     >  2:60329/1‑143 (MQ=255)                                                                                                                           aCAAGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATAGCGGTTAGCGCCGGAACAGAAAGc    >  2:23105/1‑143 (MQ=255)                                                                                                                             aaGTTCGAG‑TACTGTTCCAGCATGGGAATATCGAGGAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTGTGCCAGAATGTCTTGATCATCGAGGTTAGCGCGGGAACAGAGAGCgg  >  1:644755/1‑143 (MQ=255)                                                                                                                                      |                                                                                                                                       TATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAGAATTTCTTGATCATCGCGGTTAGCGCCGGAACAGAAAGCGG  >  NC_000913/3350874‑3351141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑