mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 24.2% | 122.1 / 38.4 | 92 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 29 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4405038 | 80 (1.670) | 6 (0.130) | 6/272 | 5.2 | 7.2% | coding (352/1299 nt) | purA | adenylosuccinate synthetase |
| ? | NC_000913 | = 4405046 | 79 (1.720) | coding (360/1299 nt) | purA | adenylosuccinate synthetase | |||||
| * | ? | NC_000913 | = 4094682 | NA (NA) | 32 (0.800) +23 bp |
4/238 | 5.5 | NA | intergenic (‑410/+41) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| ? | NC_000913 | 4285324 = | NA (NA) | noncoding (13/34 nt) | other | REP320a | |||||
| * | ? | NC_000913 | 1429011 = | 113 (2.360) | 5 (0.110) | 5/268 | 5.5 | 4.6% | intergenic (+27/‑38) | lomR/stfR | Rac prophage; protein LomR_1/Rac prophage; putative membrane protein |
| ? | NC_000913 | 1429033 = | 102 (2.260) | intergenic (+49/‑16) | lomR/stfR | Rac prophage; protein LomR_1/Rac prophage; putative membrane protein | |||||
| * | ? | NC_000913 | = 4439844 | 90 (1.880) | 5 (0.110) | 4/262 | 6.0 | 5.7% | intergenic (+51/+28) | ytfK/ytfL | DUF1107 domain‑containing protein YtfK/putative inner membrane protein |
| ? | NC_000913 | = 4439845 | 83 (1.880) | intergenic (+52/+27) | ytfK/ytfL | DUF1107 domain‑containing protein YtfK/putative inner membrane protein | |||||
| * | ? | NC_000913 | 4317918 = | NA (NA) | 4 (0.090) | 4/270 | 6.1 | NA | noncoding (1/36 nt) | other | REP323a |
| ? | NC_000913 | 4317948 = | NA (NA) | noncoding (31/36 nt) | other | REP323a | |||||
| * | ? | NC_000913 | = 4215260 | 83 (1.730) | 6 (0.130) | 4/270 | 6.1 | 7.1% | intergenic (+51/‑218) | metA/aceB | homoserine O‑succinyltransferase/malate synthase A |
| ? | NC_000913 | = 4215264 | 78 (1.710) | intergenic (+55/‑214) | metA/aceB | homoserine O‑succinyltransferase/malate synthase A | |||||
| * | ? | NC_000913 | = 4089688 | 82 (1.710) | 4 (0.090) | 4/268 | 6.1 | 4.9% | coding (168/1749 nt) | frvR | putative transcriptional regulator FrvR |
| ? | NC_000913 | = 4089704 | 79 (1.750) | coding (152/1749 nt) | frvR | putative transcriptional regulator FrvR | |||||
| * | ? | NC_000913 | = 3944984 | NA (NA) | 4 (0.090) | 4/272 | 6.2 | NA | noncoding (1281/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 3944991 | NA (NA) | noncoding (1288/2904 nt) | rrlC | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 3944978 | NA (NA) | 4 (0.090) | 4/272 | 6.2 | 9.7% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 4038811 | 39 (0.810) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 3946824 | 14 (0.290) | 5 (0.110) | 4/280 | 6.3 | 15.7% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA/tRNA‑Asp |
| ? | NC_000913 | = 4171801 | 40 (0.850) | intergenic (+45/‑256) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||