Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 568,268 IS1 (–) +9 bp 100% intergenic (+21/‑39) renD → / → emrE DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258675NA (NA)43 (0.780) 40/264 NT 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 568268 = 0 (0.000)intergenic (+21/‑47) renD/emrE DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE
* ? NC_000913 = 5682760 (0.000)43 (0.790) 37/262 NT 100% intergenic (+29/‑39) renD/emrE DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE
?NC_000913 = 1050545 NA (NA)noncoding (768/768 nt) IS1 repeat region

AATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/568138‑568276
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATACCGCT  <  NC_000913/1050545‑1050403
                                                                                                                                                                                                                                                                                          
AATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTA                                                                                                                                             >  1:276750/1‑143
      AAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTAGATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACT                                                                                                                                       >  2:986364/1‑143
                      gaagcgGATTTTTAAGGAGTGTCGCCAGAGGGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGT                                                                                                                       <  2:508645/137‑1
                               TTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGT                                                                                                              >  1:782244/1‑143
                                    AGGAGTTGCGCCAGAGTGCCTCGATGAAACAGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA                                                                                                         <  2:615595/143‑1
                                      ggGTGTCGCCTGAGTGCCGCGATGAGACGGGTATTGAGGGTATATAATAGTTCATCTATGGGAACACAATGTTGATTCAGGTGTGTTGTGTTCAATCTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATA                                                                                                       <  2:102787/141‑1
                                           TCGCCACAATGCCGCGGTGAAGCTGGTATTGAGTGTATAGAAAAGAACATCAATGGGAACACAATGAGGAAACAGGTGAGTTGAGGTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAGAATGCC                                                                                                  <  2:371287/143‑1
                                             GCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACCGTAGGTAATGACTCCAACTGATTGATAGTGTTTGAAGCTCAGATAATGCCCG                                                                                                >  2:674408/1‑143
                                              CCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGA                                                                                               >  2:369500/1‑143
                                                      CCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG                                                                                       <  1:198825/143‑1
                                                      CCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG                                                                                       <  2:316054/143‑1
                                                       CGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTGATGTTCAGATAATGCCCGATGACTTTGT                                                                                      >  2:183762/1‑143
                                                                  GGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAAAAGGTGAGTTGAGTTCAAACTATAGGTAATGACTCAAACTTATTGATAGTGTCTTATGTTCAGATAATGCCCGATGACATTATCATGCAcatcg                                                                           >  2:712622/1‑138
                                                                  GGGTATTGAGGGTAGATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCC                                                                           <  1:627249/143‑1
                                                                   agaATTGTGGGTATATATAAGAACATCAATGGGAACTCAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCA                                                                          <  2:257219/140‑1
                                                                     ggTTGAGGGTCTGTCAAATGACATCAATGGGAACACAATGCGGAAACGGGTGAGTTGAGTTCAAACTGGAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCTGTTGTCTTTGTCATGGAGCTCCACC                                                                        <  2:329412/141‑1
                                                                     TATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGCGTTGAGTTCAAACTGTAGGTGATGACTCGAACTTATTGATAGTGGTTTATGTTCAGATAATCCCCGATGACTTTGTGATGCAGCTCCACC                                                                        >  1:335088/1‑143
                                                                      ATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCG                                                                       >  2:841171/1‑143
                                                                           GGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAATGATTCCAGTGATGCAAGTGCGCGATGTCTTTGTCATGCAGCTCCACCGATTTT                                                                  >  1:1050703/1‑143
                                                                           GGGTAGATAGAAGAACATCAATGGGAACACAAGGATGAAGCAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTT                                                                  <  2:171249/143‑1
                                                                             GTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCCGCTCCACCGCTTTTGA                                                                >  2:435161/1‑143
                                                                                   AAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGGTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAGTTTGGGAACGA                                                          >  2:905718/1‑143
                                                                                   AAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTACAAACTGTAGGTAATGACTCCAACTTATTGATAGGGTTGTATGTACAGATAATGCCCGATGACATTGTCATCAAGCACCAACGATTTTGAGAACGA                                                          >  2:906369/1‑143
                                                                                     AAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCGACTTATTGGTAGTGTTTTATGTTCAGATAATGCCCGATGACGTTGTCATGCAGCTGCACGGGTTTTGAGAACGccc                                                        >  1:155484/1‑140
                                                                                            gCAATTGGAACACAATGATCAAACAGGTGAGTTGACTTCAAACTGTAGGTAATGCCTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTT                                                 <  1:789321/142‑1
                                                                                              gATGGGAACACAATGCTGCAACCTGTGTGTTGAGTTCAAACTGTAGGTAATGTCCTCAATTGTTTGATCGTGCTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCC                                               <  2:513104/142‑1
                                                                                              AATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACGGATTTTGAGAACGACAGCGACTTCC                                               >  1:332274/1‑143
                                                                                                TGGGAACACAAGGCTGAAACAGGTCAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGACGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT                                             <  1:785740/143‑1
                                                                                                        CAATGATGAAACAGGTGAGTTGAGTTCAAACAGTAGGTAATGACTCCAACTTATAGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCTCAGCCG                                     >  1:425195/1‑143
                                                                                                         AATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGT                                    <  2:901784/143‑1
                                                                                                              TGAAACCGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAG                               <  1:123829/143‑1
                                                                                                              TGAAACAGGTGAGTTTAGATCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCTGATGTCTTTGTCATGCAGCTCCACCGATTTTGAGAACGTCAGCGACTTCCGTCCCAGCCGTGCCAG                               <  1:760958/143‑1
                                                                                                              TGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAG                               >  2:899698/1‑143
                                                                                                                gAACGGGTGAGTGGAGTTCAAACTGTAGGTAATGACTCCAACTTATGGATAGTGTTTTATGTTCAGATGATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGT                             <  2:678029/142‑1
                                                                                                                 AACAGGTGAGGTGAGTTCAAAATGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTGCAGATAATGCCCGGTGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGGCTTCCGTCCCAGCCGTGCCAGGTG                            <  1:321127/143‑1
                                                                                                                    AGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTG                         <  1:547881/143‑1
                                                                                                                        tAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTC                     <  1:1030432/142‑1
                                                                                                                        GAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTGATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTC                     <  2:725709/143‑1
                                                                                                                          GTTTAGTTCATACTGCAGGTACTGATTCCACTTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGGCATGCAGCTCCACCGATTCTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAG                   <  2:765188/143‑1
                                                                                                                             GAGTTCAAACTGTAGCTAATGACTCCAACTGATTGATAGTGTTTTATGTTCAGATAGTGCCCGATGACTTTGTCATGCAGCTCCTCCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATT                <  2:481152/143‑1
                                                                                                                                TTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCtg             <  1:672952/143‑3
                                                                                                                                TTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAG             <  1:891839/143‑1
                                                                                                                                TTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAG             >  1:918087/1‑143
                                                                                                                                TTCAAACTGTAGGTAATGACTCCAACTGATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAG             <  1:812489/143‑1
                                                                                                                                           GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATACCGCT  <  2:632469/143‑1
                                                                                                                                                                                                                                                                                          
AATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/568138‑568276
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATACCGCT  <  NC_000913/1050545‑1050403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.