New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	66 (1.240)	55/256	NT	100%	intergenic (+253/‑33)	ychE/insH21	putative inner membrane protein/IS5 transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

AGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT  >  NC_000913/1299363‑1299640                                                                                                                                        |                                                                                                                                               attcagttataagGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataa                                                                                                                                         <  2:728176‑M1/139‑8 (MQ=255)   ttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGCATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataatactc                                                                                                                                       >  2:189055‑M1/1‑134 (MQ=255)       ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatt                                                                                                                                   <  2:595538‑M1/143‑14 (MQ=255)       ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataataaatt                                                                                                                                   >  1:1014270‑M1/1‑130 (MQ=255)           aaGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtta                                                                                                                               >  2:86884‑M1/1‑126 (MQ=255)           aaGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTAGCCACATCATAATCCTGGGCTTGATGAAGAATAATTGAACTGATATTATTAATTCCCCTGCCTTTGGTAGCGGAAAGTGCGAAataataataaattgtta                                                                                                                               >  1:520170‑M1/1‑126 (MQ=255)             ggATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAActaataatcaattgttaaa                                                                                                                             <  2:851927‑M1/143‑20 (MQ=255)             ggATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaa                                                                                                                             <  1:619313‑M1/143‑20 (MQ=255)             gcagttccttAACTTCTTCTCCTCACGTTCAGGTTATTTTCGCCACATCATAACTCTGTGTTTGCTGAAGTATAATTGAAATGATATTATTAATTCCACTGCCTTTGTTAGAGGATAGTGCTAAataataatcaattgttaaa                                                                                                                             <  2:806607‑M1/139‑20 (MQ=255)              gATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATACTTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGCAAGTGCTAAataataatcaattgttaaat                                                                                                                            >  2:1047092‑M1/1‑123 (MQ=255)                         cTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatt                                                                                                                 >  1:1053040‑M1/1‑112 (MQ=255)                            cTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                                                                                                              >  1:293415‑M1/1‑109 (MQ=255)                                 cctcTCCATCATGTTATTTTCGCCACATCATAATCCTGGGTTTGCTGAAGAAGAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactact                                                                                                         <  2:657045‑M1/143‑40 (MQ=255)                                 cctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataataaattgttaaattattgtgcatttctatact                                                                                                         >  2:604567‑M1/1‑104 (MQ=255)                                  ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTACTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                        >  1:261011‑M1/1‑103 (MQ=255)                                  ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                        >  1:281616‑M1/1‑103 (MQ=255)                                  ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                        <  1:467888‑M1/143‑41 (MQ=255)                                  ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                        <  2:782111‑M1/143‑41 (MQ=255)                                       catcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttccctactgcaact                                                                                                   >  1:139285‑M1/1‑98 (MQ=255)                                       catcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaact                                                                                                   <  2:955305‑M1/143‑46 (MQ=255)                                            tGTTATTTTTGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                              <  1:360961‑M1/143‑51 (MQ=255)                                            tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                              >  2:990215‑M1/1‑93 (MQ=255)                                             gTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGACATGTTATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc                                                                                             <  1:40101‑M1/143‑52 (MQ=255)                                              gtgttttcgcCAAATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatca                                                                                            <  1:62918‑M1/140‑53 (MQ=255)                                               tATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatgattgataatttcacaaatggaaaggtaatacg                                                                                           >  2:663853‑M1/1‑90 (MQ=255)                                                aTTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcaga                                                                                          >  2:690151‑M1/1‑89 (MQ=255)                                                       ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata                                                                                   >  2:951845‑M1/1‑82 (MQ=255)                                                       ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCAACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttgactactggaactgtaatcagaaaggata                                                                                   >  1:1003053‑M1/1‑82 (MQ=255)                                                         acaTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagataga                                                                                 >  1:895799‑M1/1‑80 (MQ=255)                                                            tcatAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttagattattgtgcatttcactactggaactgtaatcagaaaagatagacat                                                                              >  1:868504‑M1/1‑77 (MQ=255)                                                              atAATCCTGGGCTTGCTGAAGAATAATTGAAACGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggcactgtaatcagaaaagttagacatgc                                                                            >  2:553575‑M1/1‑75 (MQ=255)                                                                aaTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctt                                                                          >  1:627778‑M1/1‑73 (MQ=255)                                                                 aTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctta                                                                         <  1:794528‑M1/143‑72 (MQ=255)                                                                 aTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctta                                                                         <  1:804858‑M1/143‑72 (MQ=255)                                                                     tGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagcca                                                                     >  1:501565‑M1/1‑68 (MQ=255)                                                                         cTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatct                                                                 >  1:185633‑M1/1‑64 (MQ=255)                                                                                aagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctattag                                                          >  2:998995‑M1/1‑57 (MQ=255)                                                                                 ataataattgAAATTATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttga                                                         <  1:479931‑M1/141‑88 (MQ=255)                                                                                  gaaTAATTGAAATGCTATTATTTATTCCACTGTCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaagtattgtgcatttcactactggtactgtaatcagaaaagatagacatgcttagccaatctctatttgat                                                        <  2:367783‑M1/143‑89 (MQ=255)                                                                                      aatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcacttgttaagttattgtgcatttcactactgaaactgtaataagataagatagacatgcttagccaatcactcttcgattgag                                                    >  2:82195‑M1/1‑51 (MQ=255)                                                                                      aatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaa                                                    <  1:629668‑M1/143‑93 (MQ=255)                                                                                       atTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaat                                                   <  2:732742‑M1/143‑94 (MQ=255)                                                                                        ttGAAATGATATTATTAATTTCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaatt                                                  <  2:569042‑M1/143‑95 (MQ=255)                                                                                        ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaacgatagacatgcttagccaatctctatttgattgaatt                                                  >  1:455826‑M1/1‑49 (MQ=255)                                                                                        ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaatt                                                  >  1:898993‑M1/1‑49 (MQ=255)                                                                                          gAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattga                                                >  2:103185‑M1/1‑47 (MQ=255)                                                                                          gAAATGATATTATTAATTACACAGGCTTTGGTAGAGGAAAGTGATAAataataatcaattgttaaattatggtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattga                                                <  2:513499‑M1/143‑97 (MQ=255)                                                                                           aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaattgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgga                                               >  1:887323‑M1/1‑46 (MQ=255)                                                                                           aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaa                                               <  2:895799‑M1/143‑98 (MQ=255)                                                                                           aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaa                                               <  1:766323‑M1/143‑98 (MQ=255)                                                                                            aaTGGTGTTATTTATTCCAATGCCTATGGTAGAGGACACTGCTAAagaataatcaattgttaaattattgtgcatttcactactggaaccgtaatcagaaaagatagacatgcttagccaatctctatttgattgaactgaaa                                              <  2:595844‑M1/143‑99 (MQ=255)                                                                                            aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                              >  2:268923‑M1/1‑45 (MQ=255)                                                                                                atatTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtaaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatg                                          <  1:889829‑M1/143‑103 (MQ=255)                                                                                                 tattatTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgt                                         <  2:281616‑M1/143‑104 (MQ=255)                                                                                                   ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatccattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttt                                       >  1:1016702‑M1/1‑38 (MQ=255)                                                                                                     attaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgt                                     >  1:340202‑M1/1‑36 (MQ=255)                                                                                                         aTTCCACTGCCTTTGGTAGAGGAAAGTGGTAAataaaaatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                                 >  2:78415‑M1/1‑32 (MQ=255)                                                                                                          ttCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaagg                                <  1:990215‑M1/143‑113 (MQ=255)                                                                                                          ttCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaagg                                >  1:646472‑M1/1‑31 (MQ=255)                                                                                                               cTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattataagatttaattgtttttcactactggaacgctaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatgg                           <  1:1007173‑M1/143‑118 (MQ=255)                                                                                                               cTGCCGTCGGGAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatgg                           <  1:17981‑M1/143‑118 (MQ=255)                                                                                                                       ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagc                   <  1:98139‑M1/143‑126 (MQ=255)                                                                                                                       ggTAGAGGAAAGTGCTAAataagaatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagc                   <  2:261011‑M1/143‑126 (MQ=255)                                                                                                                        gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagct                  <  1:267057‑M1/143‑127 (MQ=255)                                                                                                                             gtaaactGCTAAatactaatcaatcgttacattactgtcgatttcactactggaactgtaatcagaaaagatagacatgctttgccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctataga             <  2:858808‑M1/141‑132 (MQ=255)                                                                                                                             aacataggCTAAGGAAGGTGCGAACAAGTCCCTCATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCAGCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGaaaa             <  1:412444/136‑1 (MQ=2)                                                                                                                              gAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagat            >  1:258305‑M1/1‑11 (MQ=255)                                                                                                                                     cTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgata     >  2:432365‑M1/1‑4 (MQ=255)                                                                                                                                      tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatac    >  2:367594‑M1/1‑3 (MQ=255)                                                                                                                                       aaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcgagctatagcttctgctacg   >  1:616251‑M1/1‑2 (MQ=255)                                                                                                                                       aaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacg   >  1:695744‑M1/1‑2 (MQ=255)                                                                                                                                        aataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagacaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacgg  >  2:281124‑M1/1‑1 (MQ=255)                                                                                                                                        |                                                                                                                                               AGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT  >  NC_000913/1299363‑1299640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.