Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,733,600 | A→G | 7.3% | E467G (GAA→GGA) | xylG → | xylose ABC transporter ATP binding subunit |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,733,600 | 0 | A | G | 7.3% | 137.7 / 3.3 | 63 | E467G (GAA→GGA) | xylG | xylose ABC transporter ATP binding subunit |
Reads supporting (aligned to +/- strand): ref base A (34/22); new base G (2/3); total (37/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.92e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.35e-02 |
TGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCT > NC_000913/3733459‑3733740 | tgtTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGaa < 1:336193/143‑1 (MQ=255) cTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGCTATTGGCGCGAACTACGCGATCTACAAATTAATGAACCAACTCGTCCAGCAGGGTATTGCCGTTATTCTCCTCTCTTCCGAATTCCGTGACGTgac > 2:518215/1‑141 (MQ=255) gcgcATTCTCATTCTGGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTa < 1:90733/143‑1 (MQ=255) cattctcattctTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACGCGGACAGCAGGGTATTGCCGTGATTTTGCTGTCTTCCGAATAACCTGAAGTGCTCGGCACTAGca > 2:1060024/1‑142 (MQ=255) attctcattctTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCGGTTGTTGTCATCTTTTCCGAATTACCTAAAGTACTCGATCTTAGcta > 1:77402/1‑141 (MQ=255) tctcattctTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATc < 1:1063374/143‑1 (MQ=255) tcattctTGATGAACCCACCTGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCgt < 1:682904/143‑1 (MQ=255) tcattctTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTAAAAATTAATTAACCAACTCGTCCAGCAGGGGATTGCCGTTGTTGTCATCTCTTCAGAATTAACTGAAGTGAGCGGACAGAGCGATAgt > 1:249802/1‑143 (MQ=255) cattctTGATGAACCCACGAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCGGTTATTGTAATGTATTAAGAATTAACTGAAGTGATGGGCATTAGTGATCgtg > 2:388612/1‑143 (MQ=255) attctTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGGATTACCTGAAGTGCTCGGCCTTAGCGATCgcgt > 1:432777/1‑143 (MQ=255) gtctTGACGAACGCACCAGTGGTATCGATATTGGCGCGAACTACGCGCTCTACAAATTAATTACCCACCTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGTAGTGCTCGGCCTTAGCGATCGTGTa < 2:1050505/142‑1 (MQ=255) tctTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTACAGCAGGGGATTGCCGTTCTTGTGATCTCTTCCGAATTCCGTGAAAGGCACGGCCTTGGCGGTCggatac > 1:659415/1‑138 (MQ=255) tgatgaACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTACTTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGCACTACCTCAAGTGCTCGCCATTACCCATCgtctcccgg > 2:385149/1‑136 (MQ=255) gatgaGCCCTCCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAGCTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGt < 2:386778/143‑1 (MQ=255) tgaACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTGTTGCCGTTATTGTCCTCTCTTCCGTATTACCTGTAGTGCTCGGCCTTAGCGATCGTGGACTGGTgt > 1:624376/1‑142 (MQ=255) aCCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCACCTCGTCCAGCAGGGTATTGCCGTTCTTGTCATCTCTTCCGAATTCCCTGAGGTGCTCGGCCTCAGCCACCATCTACTGGTGAtcc > 1:544675/1‑141 (MQ=255) caccaGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGCCTTACCTGAAGTGCACGGCCTTAGCGATCGTGTACTGGTGATGCATg > 2:366723/1‑143 (MQ=255) gTATCGATATTGGCGCGAAATACGGTATCTACAAATTAATTAACCATCTCTTCCAGCGGGGTATTGCCGTTATTGTCATCTCTTCCGAGTTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGaaa < 2:140713/143‑1 (MQ=255) gTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGCATTACCTGAAGTGCTCGGCCTTAGCGATCGTGGACTGGTGCTGCATGAAGGGaca > 1:673931/1‑141 (MQ=255) tCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGGAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTa > 2:923618/1‑143 (MQ=255) tCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGGAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTa > 2:363727/1‑143 (MQ=255) cGATATGGGCGCGAAATACGAGATCTACAAATTAATTAACCAGCTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTaa < 1:627900/143‑1 (MQ=255) gATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCGTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTAGTGATGCATGAGGGGAAAcgaca > 1:12654/1‑139 (MQ=255) tccttGGCTCTATATTCGAGTTCTACAACTGTATTTACCATCCTGTCCAGCAGGTTATTTCCGTTAGTGTCCTCTCTGCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGTTGATGCATGAAGGGAAACTaaaa < 2:899676/140‑1 (MQ=255) tGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGCTGCATGAAGGGACCCTAAAAGCCa > 2:331879/1‑143 (MQ=255) gcgcGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGGAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAAc < 1:363727/143‑1 (MQ=255) gcgcGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGGAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAAc < 1:923618/143‑1 (MQ=255) gcgcGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTGCTGGTGATGGATGAAGGGAAACTAAAAGCCAAc > 1:960633/1‑143 (MQ=255) cgcgAAATACGAGATCTACAAATTCATTAACCCACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAAcc > 2:146060/1‑143 (MQ=255) cgcgAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGATAACATCTCCGCGTTGGAATTACCTGAAGTGCTCGGCCTTAGGGTTCGTGTAATGGTTATTCATGACGGACAACCAGAAGCCagac > 2:983023/1‑140 (MQ=255) cgAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGACGGGAAACTAAAAGCCGACCTg > 2:672594/1‑143 (MQ=255) aaaaTACGAGATCCACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATGGTCATCTCTTCCGAATGACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGa < 1:207472/142‑1 (MQ=255) aaaTACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTCCCTGAAGTGCTCGGCCTTAGCGCTCGTGTACTGGTCATGCCAGAAGGGAAAATAAAAGCCAAACTGAt > 2:403351/1‑143 (MQ=255) aaTACGATACCTGCATATTTATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTTAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATa < 1:142793/143‑1 (MQ=255) tCTACAAACTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAAc < 1:605402/143‑1 (MQ=255) tACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCATAGCGATCGTGGACTGATGATGCAGGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCt > 2:519108/1‑143 (MQ=255) aattaattAACCCACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAAGTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACt < 2:247758/143‑1 (MQ=255) aattaaCCAACTCGTCCAGCAGGGTATTGCCGTTATTGGCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCAGGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAgg < 2:422855/143‑1 (MQ=255) attcaCCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGa < 1:154692/143‑1 (MQ=255) ccAACTCGTCCAGCAGGGTATTGCCGTTAATGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAgg > 1:1061287/1‑143 (MQ=255) atcTCGTCCAGCAGGGTATTGTCGTTATTGTTATCTCTTCCGAATTACAGGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTg < 1:549818/141‑1 (MQ=255) aCTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTCGCGATCCTGTAATGGTGAGGAATGAAGGGAAACTAAAAGCCAACCTGATAACTCCTAAACCGTATCAAGAGCaagcga > 2:683538/1‑138 (MQ=255) tCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGCTggca > 1:201325/1‑141 (MQ=255) tCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGaa > 1:185807/1‑143 (MQ=255) cagcagGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGc < 1:594806/143‑1 (MQ=255) gtagggCCGTTAGTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTg < 2:863526/138‑1 (MQ=255) ttGCCGTCATTGTCATCTCTTCCAAATTACCAGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACATGACCCAGGAGCAGGAGATGGAAGCCGCAttaaag > 2:820161/1‑139 (MQ=255) tGCCGTTATTGTCATCTCTTCCGAGTTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTgagga < 2:391238/143‑1 (MQ=255) ccGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGc > 1:377199/1‑143 (MQ=255) ccGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGc > 1:490537/1‑143 (MQ=255) ccGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCGTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCCTTGAGgcgc > 2:860069/1‑143 (MQ=255) gTTATTGTCATCTTTTCCGGAGTAGCTGGAGTGCGCGGCCTAAGCGATCGTGTACTGGTGATGCATGAGGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGa < 2:627300/143‑1 (MQ=255) tGTCCTCCCTTCCGAATTACCTGAAGTGCTCGGCCTGAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATCACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAAcatc < 1:783805/143‑1 (MQ=255) tctctcTGCCGAAGTAGCTGAAGTGCTCGGCCTTAGCGAGCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCCGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATg < 2:77402/141‑1 (MQ=255) aTCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACCCAGCAGCAGCTGATGCAAACCGCATTGAGGAGCCAACATCATgc > 2:260479/1‑142 (MQ=255) tctcTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGACACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCAGTGAGGAGCGAAcatacggta > 2:814893/1‑137 (MQ=255) tctTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCCGGAGGAGGAGAGCGAAACCGCATTGAGGAGCGAACATCATGTCGa > 2:1029085/1‑143 (MQ=255) gctTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGa < 1:434954/142‑1 (MQ=255) ttCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGTAACTAAAAGCCAACCTGACAACTCATAACCTGACTAAGAAACAGGTGATGGAAGCCGCAAAGATGAGCGAACATCATGTCGaag > 2:267758/1‑142 (MQ=255) cccGAACTACCCCAAGTCCTCGGCCTTAGCGACCGTGTACTGGCGATGCATGAAGGGACACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGTAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGaaaa < 1:69100/142‑1 (MQ=255) cGAATTACGTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCGTGCCGGGAAACTAAAAGCAAACCGGATAAATCATAAACGGACTCAGGCGCCGGCAATGGTAGCCGCATTGAGGAGCGACGCTCATGTGGagacgc > 2:105588/1‑138 (MQ=255) aCCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCg > 1:738056/1‑143 (MQ=255) ccTGAAGTGGGCGGCCGTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGt < 1:814166/143‑1 (MQ=255) tGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGACAAGCAACACGTCt > 1:883394/1‑143 (MQ=255) | TGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCT > NC_000913/3733459‑3733740 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |