| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,362,529 | T→C | 5.9% | intergenic (‑595/+22) | cadC ← / ← pheU | DNA‑binding transcriptional activator CadC/tRNA‑Phe |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,362,529 | 0 | T | C | 5.9% | 270.8 / 4.9 | 104 | intergenic (‑595/+22) | cadC/pheU | DNA‑binding transcriptional activator CadC/tRNA‑Phe |
| Reads supporting (aligned to +/- strand): ref base T (51/43); new base C (2/5); total (54/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.99e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
GCTCAGGAACAAATTTTCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAAC > NC_000913/4362389‑4362666 | gCTCAGGAATGAATTTTACCGGATTGGGATATGCCCGCAAACTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAGACGAAAAACGGACCTCCGTgg < 2:343543/143‑1 (MQ=255) tCAGGAACGAGTTGTCCCGAATTGGGATATGCCCGCGAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAg < 2:291876/143‑1 (MQ=255) tCAGGAACAAATTCTCCCGAACTGGGATAGGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAAGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAg < 1:523059/143‑1 (MQ=255) gaggaCAAATTTTCCCGAATTGGGATATGCCCGCAAATTGCTGTTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCGTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGt < 2:610157/139‑1 (MQ=255) aGGAACAAATTTTCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGCCCTCCGTGGAGGt > 1:168917/1‑143 (MQ=255) gAACAAATTTTCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTAAAACGAGAAACGGACCTCCGTGGAGGTcc > 2:1048749/1‑143 (MQ=255) aaCAAATTTTCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGACAAACGGACCTCCGTGGAGGGCCg > 2:662318/1‑143 (MQ=255) aaCAAATTTTCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCg > 1:554410/1‑143 (MQ=255) gcaaggtttCCCGAGTTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTACAACTCTTACGGTGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAGACGGACCTCCACGGAGGTCCGt < 2:515083/137‑1 (MQ=255) aCAAATTTTCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGt > 1:300563/1‑143 (MQ=255) aCAAATTTTCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCACGGAGGTCCGt < 1:456923/143‑1 (MQ=255) cAAATTTTCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGtt > 1:630976/1‑143 (MQ=255) aaaTTTTCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGttt > 1:14871/1‑143 (MQ=255) aaTTTTCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAGATGC‑AAAGTCTTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTta > 1:1054455/1‑143 (MQ=255) aaTTGTCCCGAAGTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGAATTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCACGGAGGTCCGtttt < 2:531854/143‑2 (MQ=255) tttgtCCCGGATTGGGAGATGCCCGCAAATGGGTGCTGAGGGGGGGAGAATCTGGTTGAGTTCGGTAGAATGGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCGTGAAACGAAAAACGGACCGCCGTGGAGGTCCGTTtat < 2:81915/139‑1 (MQ=255) atgttCCCGAATTGGGATATGCCCGCGAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATGGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTtat < 2:123775/140‑1 (MQ=255) atgttCCCGAATGGGGATATGCCCGCATATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCACGGAGGTCCGttttt < 1:717177/140‑3 (MQ=255) aTTTTCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGGTTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTtat < 1:750450/143‑1 (MQ=255) aTTTGCCCGAATTGGGATATGCCCGCAAAGTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTtat < 1:524410/143‑1 (MQ=255) ttttCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTtata > 1:37172/1‑143 (MQ=255) cctgAATTGGGATATGCCTGCAAATTGCTGGGGGAGAGGGGAGAAGCGGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGaa < 1:538213/140‑1 (MQ=255) cccGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGAATTGCAGGCATA‑ACGCTTAACTCGTGGCGTCCTGAAACGAAAAACGGACCTACGTGAAGGGCGGGTGATATGaa > 1:542398/1‑143 (MQ=255) ccGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGCTTATCTGaaa > 2:623534/1‑142 (MQ=255) ccGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGATTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAAt > 2:522536/1‑143 (MQ=255) ccGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGATAGAATTGACTAGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGCAGGTCCGTCTATATGact > 2:126976/1‑141 (MQ=255) aaTTGTGATATGCCCGCAAATTGCTGGTGAGGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAGCGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTg < 2:912880/143‑1 (MQ=255) aTTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGATCCGTTTATAAGAATTTgg > 2:596683/1‑143 (MQ=255) gtatatGGCCGCAAGTTGCGGGTGATGTGGTGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGT‑ACGCTTAAATCGTGGCTTCCTGAAACGAAAAACGGCCCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑cc < 2:593045/141‑1 (MQ=255) gATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAACACGGACCTCCGTGGAGGTCCGTCTATATGAATTTGGCG‑ccc > 1:512790/1‑143 (MQ=255) atGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGGTTATATGAATTTGGTG‑CACGGa > 1:375147/1‑143 (MQ=255) tGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGAc > 2:1059300/1‑143 (MQ=255) ccGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCg > 1:138808/1‑143 (MQ=255) ccGCAAATCGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGACGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCg < 1:81861/143‑1 (MQ=255) ccGCAAAGTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCg < 1:613123/143‑1 (MQ=255) cGCAAATTGCTGGTGATGTGGGGAGAGTCTGGTTGAGCTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCgg < 1:193584/143‑1 (MQ=255) cGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAACCGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCgg > 1:663861/1‑143 (MQ=255) gCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTAATTTGGAGGCAGA‑ACGCTTAAATGGTGGCGTCCTGAAACGAAAAACGGACCTACGTGGAGGTCCGTTTATATGAATTTGGTG‑CACGAAATCGGa > 2:276146/1‑143 (MQ=255) agaaTTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGaa < 1:623317/141‑1 (MQ=255) aaaTTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAAt < 1:91253/143‑1 (MQ=255) aaaTCGCGGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAAt < 2:968519/143‑1 (MQ=255) acttGCTGGTTTCGTGGGGAGAACGCGGTTGAGTGCGTTGGCGTTGATTTGGAAGCAGA‑ACGCTTAAATCGTGGCGTACTCAAACGAACAACGGACCCCCGGGGAGTTGCGCTTATATGAATGCGGTC‑CCCGGACTGGGAATc < 2:392480/141‑1 (MQ=255) ttGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGa > 1:541421/1‑143 (MQ=255) cTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGaaac > 2:1044907/1‑141 (MQ=255) tGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTACGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCa > 1:405046/1‑143 (MQ=255) ggTGATGTGGGGAGAATCTGGTTGAGGTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCaa < 1:412046/143‑1 (MQ=255) gTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAg < 2:459627/143‑1 (MQ=255) gTGATGCGGGGAGAATCTTGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAg < 1:162869/143‑1 (MQ=255) gTGAGGTGGGGAGAATCTGGGTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAg < 1:189509/143‑1 (MQ=255) tgGGGAGAATCTGGTTGAGTTCGGTGGAATTGTAGTGGGGGTAGA‑ACGCTTAAATCGTGGGGGCCTGAAAGGAAAAACGGACCGCCGTGGAGGACCGTTTATAGGAATTGGGTG‑ACCGGACTCGGACTCGCACCAAGGAAACg > 2:378559/1‑143 (MQ=255) tgGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACg > 1:839097/1‑143 (MQ=255) gggAGAATCTGGGTGAGTTCGGGAGAATTGGTTTGGAGGCAGA‑ACGCTGCAATCGTGGCGTCCCGCGACGCAACACGGGCCTCCGTGGAGGCCCGTTTATATGAATTTGGTG‑CACGGCGTCGGGAGCGAACCAAGGCCACggg > 2:152972/1‑143 (MQ=255) aaTCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGAttt > 2:91872/1‑143 (MQ=255) tCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTc > 2:1045232/1‑143 (MQ=255) catGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTc < 1:996570/141‑1 (MQ=255) tGAGTTCGGTAGAATTGATTTGGAGACTGT‑GCTCGTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATccc < 1:947138/143‑1 (MQ=37) gTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTg < 1:737340/143‑1 (MQ=255) ttCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGc > 2:714828/1‑143 (MQ=255) ttCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGGCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGc > 2:319645/1‑143 (MQ=255) ttCGGTAGAATTGATTTGGAGGCAGA‑ACGACAAAACAATGACTTTCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTAAATGAATTTGGTG‑CCCGGACTAGGCATCGAACCAAGGACACAGGGATTGTCAACCCCCTGc > 2:78402/1‑143 (MQ=255) cGGTAGAATTGATTTGGAGACAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGCTTATATGAATTTCGTG‑CCCGGACTCGGAATAGTCGCAAGCACACAGGGAGCTCCAATCCCCCGctc > 2:217492/1‑143 (MQ=255) aGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTAcc < 2:784622/143‑1 (MQ=255) aaTTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGa > 1:897734/1‑143 (MQ=255) ttGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTAccacct > 2:774480/1‑139 (MQ=255) gATTTGGAGGCAGA‑ACGCTTAAACCGTGGCGTCCTGAAACGAAAAACGGTCCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGa < 1:634707/143‑1 (MQ=255) aTTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAAGTTGGTG‑CCCGGACTCAGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAg < 2:37172/143‑1 (MQ=255) tttGGAGGCAGA‑ACGCCTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGGTGAGTTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTTCCTGCTGAGc > 1:99452/1‑143 (MQ=25) ttGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAACCCCCTGCCCTACCGACTGAGCt > 2:281471/1‑143 (MQ=255) gCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCgg > 1:105581/1‑143 (MQ=255) gCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACAGACTGAGCTATCCgg > 1:104981/1‑143 (MQ=255) cAGA‑ACGCTTAGATCGGGGCGGCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTGTGTATGGATTTGGTG‑CCCGGATGCGTAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCggg < 2:698498/143‑1 (MQ=21) tgA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGACGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGc < 2:1017119/142‑1 (MQ=255) aGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATGCGGGc > 2:6293/1‑143 (MQ=255) cTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACggg < 1:1045232/143‑1 (MQ=255) ttAAATCGTGGCGTCCTGAAACGAAAAACGGCCCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCCACTGGACTCTCCGGGCAACgggg > 2:808723/1‑143 (MQ=25) ttAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACgggg > 2:325029/1‑143 (MQ=255) tAAATCGTGGCGTCCTGACACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGgc < 1:918518/143‑1 (MQ=255) tAAATCGTGGCGTCCTGAAACGAANAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGNACTCGGAATCGAACCAAGGACACGGGGATTTTCCATCCCCTGCTCTACCCACTGAGCTATCCGGGCCACGGGgc > 1:162002/1‑143 (MQ=255) tAAATCGTGGCGTCCTGAAACGAAAAACGTACTTAAGTAAAGGGCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATATTCAATCCCCTGCTCTATCGACTACGCTATCCGGGCAGCggggg > 2:326737/1‑142 (MQ=18) aTCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTT‑CTCTGTCTCGGAATCGAACAAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCa < 1:827515/143‑1 (MQ=25) tGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTaa > 1:358132/1‑143 (MQ=255) ggCGCCCTCAAACGAAACACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTaaa < 1:761278/143‑1 (MQ=255) gccGTCCTGAAACGAAAAAGGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACCCGGAATCGAACTAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTaaa < 2:530048/141‑1 (MQ=255) cGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAAcc > 2:620731/1‑143 (MQ=255) cttGAAACGAAAAACTGACCTCCGTGGAGTTCTGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGTCTTAGTGACACAAGCATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTa < 2:375636/141‑1 (MQ=18) tGAAACGAAAAAGGGTCCGCCGTGGGGTCCCGTTCATATGAAGTTGGTG‑CCCGGACTCGGCATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCCACCGACTGCGCTATCCGGGCAACGGGGCGCATTAAACCGTAAt < 2:28181/143‑1 (MQ=17) aaaCGAAAACCGGAGCTCCGTGGAGGTCTGTTTATATGAATTTGGTG‑CCCGTACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCCTAATCt < 2:813080/143‑1 (MQ=18) aaaCGAAAAACGGACCTCCGTGGAGGTCCGGTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCt < 2:300563/143‑1 (MQ=255) aCGAAAAACGGCCCTCCGTGGAGCTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGTGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGc < 1:509580/143‑1 (MQ=255) gAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAACCCGTAATCTGcac > 2:105697/1‑143 (MQ=255) gAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTGTCAATACTCTGCTCTACCGACTGAGCTATACGGGCACCGGGGCGCAGTGAACCGTAATCTggct > 2:210549/1‑140 (MQ=21) acaCGGCCCTCCGGTGAGGCGGGTTTATATGAA‑TTGGTGTCCCCGCCTCGCCCTTGTACCAAGTATACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGTGCAACGGGGCGCATTAAACCGTAATCTGCACAtc < 2:920731/141‑1 (MQ=9) aaaCGGACCTCCACGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACAtc > 1:333689/1‑143 (MQ=255) cGGCCCTCCTTGGCGGTCCGTTTATCTGAATTTGGTG‑CCCGGACTCGGAATCGAGCCAAGGACACGGGGATTTTCAATCCCCTGCTCTACTGCCTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCg < 1:403503/143‑1 (MQ=18) cGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCCCATCTCg > 2:779347/1‑143 (MQ=255) ggACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGt > 2:289329/1‑143 (MQ=255) gACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGCAGCGCATCAAACCCTGATCTGCACATCTCGTc > 2:827170/1‑143 (MQ=18) aCCTCCGTAGAGGTCCGTTTATATGATTTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCa < 2:257415/143‑1 (MQ=255) ccTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCaa > 2:1013217/1‑143 (MQ=255) cTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCTGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAAc < 2:168917/143‑1 (MQ=255) | GCTCAGGAACAAATTTTCCCGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGA‑ACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTG‑CCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAAC > NC_000913/4362389‑4362666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |