mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.7% | 113.1 / 67.9 | 109 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 20 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3946053 | 0 (0.000) | 7 (0.170) | 6/276 | 4.2 | 100% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 7 (0.170) | 6/276 | 4.2 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 1402980 | 75 (1.780) | 5 (0.130) | 5/252 | 4.3 | 7.1% | coding (276/1446 nt) | abgB | p‑aminobenzoyl‑glutamate hydrolase subunit B |
| ? | NC_000913 | = 1402964 | 65 (1.740) | coding (292/1446 nt) | abgB | p‑aminobenzoyl‑glutamate hydrolase subunit B | |||||
| * | ? | NC_000913 | 4022006 = | 81 (1.920) | 4 (0.100) | 4/270 | 5.0 | 5.0% | coding (62/270 nt) | tatA | twin arginine protein translocation system ‑ TatA protein |
| ? | NC_000913 | 4022046 = | 76 (1.900) | coding (102/270 nt) | tatA | twin arginine protein translocation system ‑ TatA protein | |||||
| * | ? | NC_000913 | = 4094718 | NA (NA) | 4 (0.100) +ATCAAT |
4/272 | 5.1 | NA | noncoding (1/34 nt) | other | REP299i |
| ? | NC_000913 | = 4285374 | NA (NA) | noncoding (31/36 nt) | other | REP320b | |||||
| * | ? | NC_000913 | = 4094572 | NA (NA) | 4 (0.100) +ATTGAT |
4/272 | 5.1 | NA | noncoding (31/36 nt) | other | REP299f |
| ? | NC_000913 | = 4094718 | NA (NA) | noncoding (1/34 nt) | other | REP299i | |||||
| * | ? | NC_000913 | = 4089154 | 82 (1.950) | 4 (0.100) | 4/274 | 5.1 | 4.8% | coding (702/1749 nt) | frvR | putative transcriptional regulator FrvR |
| ? | NC_000913 | = 4089158 | 79 (1.940) | coding (698/1749 nt) | frvR | putative transcriptional regulator FrvR | |||||
| * | ? | NC_000913 | = 4306837 | 84 (1.990) | 3 (0.080) | 3/262 | 5.4 | 3.7% | intergenic (‑240/+33) | yjcS/alsK | alkyl sulfatase/D‑allose kinase |
| ? | NC_000913 | = 4306852 | 77 (1.980) | intergenic (‑255/+18) | yjcS/alsK | alkyl sulfatase/D‑allose kinase | |||||
| * | ? | NC_000913 | = 1463456 | 79 (1.880) | 3 (0.080) | 3/262 | 5.4 | 4.0% | intergenic (+18/‑83) | paaK/paaX | phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX |
| ? | NC_000913 | = 1463468 | 70 (1.800) | intergenic (+30/‑71) | paaK/paaX | phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX | |||||
| * | ? | NC_000913 | 2904902 = | 36 (0.850) | 3 (0.080) | 3/266 | 5.5 | 8.0% | coding (517/672 nt) | queE | putative 7‑carboxy‑7‑deazaguanine synthase QueE |
| ? | NC_000913 | 2904942 = | 35 (0.890) | coding (477/672 nt) | queE | putative 7‑carboxy‑7‑deazaguanine synthase QueE | |||||