| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3352023 | 4 (0.190) | 6 (0.290) | 6/262 | NT | 60.0% | coding (1003/2337 nt) | arcB | sensory histidine kinase ArcB |
| ? | NC_000913 | 3365556 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
CAATCCTTTTTGTTGCGCCTGCAATGCGGAGAGATTTTCCAGATCGGCAAGGAAGCTGGTGAAATCAACCGGTTGATTATCAAGCTGGACCTTGCGCCGTTCCATCTTATCCATGTCGATAATATCGTTAAAGATATTCCCCAGCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGT > NC_000913/3351892‑3352161 | cAATCCTTTTGGTTGCGCCTGCAATGCGGAGAGATTTTCCAGATCGGCAAGGAAGCTGGTGAAATCAACCGGTTGATTATCAAGCTGGACCTTGCGCCGTTCCATCTTATCCATGTCGATAATATCGTTAAAGATATTCCCCa < 1:2827/143‑1 (MQ=255) gagagaTTTTCCAGATCGGCAAGTAAGCTGGTGAAATCAACCGGTTGATTATGAAGCTGGACCTTGCGCCGTTCTATCTTATCCATGTCGATAATCTCGGTAAAggaaggtgcgaataagcggggaaattcttctcggctgac < 2:376252‑M1/143‑40 (MQ=255) ccAGATCGGCAAGGAAGCTGGTGAAATCAACCGGTTGATTATCAAGCTGGACCTTGCGCCGTTCCATCTTATCCATGTCGATAATATCGTCAAAggaaggtgcgaataagcggggaaattcttctcggctgactcagccattg > 2:237914‑M1/1‑94 (MQ=255) tgcaGCTGGTCGACTCAACCGGTTAATGATCAAGCGGGACCTTGCGCCGTTCCATCTTATCCATGTCGATAATATCGTTAAAGATATTCCCCAGCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTcggcg < 2:223027/140‑1 (MQ=255) aCCGGTGGATTATCAAGCTGGACCTTGCGCCGTTCCATCTTATCCATGTCGATAATATCGTTAAAggaaggtgcgaataagcggggaaattcttctcggctgactccgtcatttcatttcttcatgtttgagccgattttttc < 1:256378‑M1/143‑79 (MQ=255) tATCAAGCTGGACCTTGCGCCGTTCCATCTTATCCATGTCGATAATATCGTTAAAGATATTCCCCAGCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCgg < 1:1040/143‑1 (MQ=255) tCAAGCTGGACCTTGCGCCGTTCCATCTTATCCATGTCGATAATATCGTTAACggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgactttttctcccgtaaatgc > 2:221279‑M1/1‑53 (MQ=255) tCCATCTGCTCCATGTCGATAATATCGTTAAAGATATTCCCCAGCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAg < 2:358587/143‑1 (MQ=255) tCCATGTCGATAATATCGTGAAAggaaggtgcgaagaagcggggaaattcttcgcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttc < 1:58751‑M1/143‑121 (MQ=255) atCGTTAAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtcaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgt > 1:221940‑M1/1‑9 (MQ=255) ttAAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatc > 1:338524‑M1/1‑5 (MQ=255) | CAATCCTTTTTGTTGCGCCTGCAATGCGGAGAGATTTTCCAGATCGGCAAGGAAGCTGGTGAAATCAACCGGTTGATTATCAAGCTGGACCTTGCGCCGTTCCATCTTATCCATGTCGATAATATCGTTAAAGATATTCCCCAGCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGT > NC_000913/3351892‑3352161 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |