New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 609351	NA (NA)	6 (0.300)	6/256	NT	35.3%	noncoding (1345/1345 nt)	IS186	repeat region
	?	NC_000913	2227427 =	11 (0.550)					pseudogene (1332/1436 nt)	mdtQ	putative multidrug resistance outer membrane protein MdtQ

AACGCTGAATAAACGTTAAGTATAGAAGGCGCATATCATCAGCGTTTGTACCCCCCGCCCAACGCACCAGTGAGTTGAATGGAGGCATCCAGCCACTGCCCTTGCAATAACAGGCCATTGGCCCGCTCACGCAGCGCGGGGATTCTGGCTTCGCTGACGCGGGAACCAGCAATGATGCCCGCGTTAAAGCGCGCCTGCGCAAGACCTACCACACGCAAGGCATCGCGCTCAATTTGCGCCTGATGCTGGTTTTTCTCCGCC  >  NC_000913/2227285‑2227545                                                                                                                                               |                                                                                                                       cgagcttacaggtggccactcctgcgacagtacccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgatgcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggat                                                                                                                        <  2:336410‑M2/1‑1 (MQ=255)               gccattcgtgggacaggatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaTTCTGGCTTCGCTGa                                                                                                          <  2:310590‑M2/15‑1 (MQ=255)                     tataGAAGGCGCATATCATCAGCGATTGATAGCCATTCTCAACGCACCAGTGAGTTGAATGGAGGCATCCTGCCACTGCTCTTCCAAGTACATTCCATTGTCCCGCTCACCCAGCGCGGGGCTCCTGGCTTCGCTGACGCggg                                                                                                    >  2:194518/1‑143 (MQ=255)                         gAAGGCGCATATCATCAGCGTTTGTACCCCCCGCCCAACGCACCAGTGAGTTGAATGGAGGCATCCAGCCACTGCCCTTGCAATAACAGGCCATTGGCCCGTTCACGCAGCGCGGGGATTCTGGCGTCGCGGACGCggcagcc                                                                                                >  2:52899/1‑138 (MQ=255)                          gacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaTTCTGGCTTCGCTGACGCGGGAACCa                                                                                               <  1:99826‑M2/26‑1 (MQ=255)                          acggCGCATATCATCAGCGTTTGTCCCCCCCGCCCAACGCACCAGTGAGTTGAATGGAGGCATCCAGCCACTGCCCTTGCAATAACAGGCCATTGGCCCGCTCACGCAGCGCGGGGATTCTGGCTTCGCTGACGCGGGAACCa                                                                                               <  2:184828/141‑1 (MQ=255)                                  tttcatcaGCGTTTGTACCCCCCGCCCAACGCACCAGTGGGTTTAATGGAGGCATCCAGCCACTGCCCTTGCAATAGCAGGCCATTGGCCCGCTCACGCAGCGCGGGGATTCTGGCTTCGCTGACGCGGGAACCAGCAatgat                                                                                       <  2:8982/141‑1 (MQ=255)                                  gctcatcaGCGTTGGTACCCTCCGCCCTGCGCATCATTGACTTGAATGGCGGCTTCCAGCCACTGCCCTTGCAATAACATGCCATTGGCCCGCTCACGCAGCGCGGGGATTCTGGCTTCGCTGACGCGGTAACCAGCAatgat                                                                                       <  1:177896/141‑1 (MQ=255)                                     tgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaTTCTGGCTTCGCTGACGCGGGAACCAGCAATGATGcc                                                                                    >  2:306487‑M2/107‑143 (MQ=255)                                                     gcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaTTCTGGCTTCGCTGACGCGGGAACCAGCAATGATGCCCGCGTTAAAGCGCGcc                                                                    >  1:94230‑M2/91‑143 (MQ=255)                                                                      gTGAGTTGAATGGAGGCATCCAGCCACTGCCCTTGCAATAACAGGCCATTGGCCCGCTCACGCAGCGCGGGGATTCTGGCTTCGCTGACGCGGGAACCAGCAATGATGCCCGCGTTAAAGCGCGCCTGCGCAAGACCTACcac                                                   >  2:337156/1‑143 (MQ=255)                                                                               aTGGAGGCATCCAGCCACTGCCCTTGCAATAACAGGCCATTGGCCCGCTCACGCAGCGCGGGGGTTCTGGCTTCGCTGACGCGGGAACCAGCAATGATGCCCGCGTTAAAGCGCGCCTGCGCACGACCTACCCCACGCAGGGc                                          >  1:101911/1‑143 (MQ=255)                                                                                    gaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaTTCTGGCTTCGCTGACGCGGGAACCAGCAATGATGCCCGCGTTAAAGCGCGCCTGCGCAAGACCTACCACACGCAAGGCATcgc                                     >  1:269378‑M2/60‑143 (MQ=255)                                                                                                     cTTGCAATAACAGGCCATTGGCCCGCTCACGCAGCGCGGGGATTCTGGCTTCGCTGACGCGGGAACCAGCAATGATGCCCGCGTTAAAGCGCGCCTGCGCCCGCCCAACCTCACGCAAGGCATCGCGCTCACTTTGCGCCTgc                    >  1:269046/1‑142 (MQ=255)                                                                                                         cAATAACAGGCCATTGGCCCGCTCACGCAGCGCGGGGATTCTGGCTTCGCTGACGCGGGAACCAGCAATGATGCCCGCGTTAAAGCGCGCCTGCGCAAGACCTACCACACGCAAGGCATCGCGCTCAATTTGCGCCTGATGCt                <  1:194518/143‑1 (MQ=255)                                                                                                                  gCCATTGGCCCGCTCACGCAGCGCGGGGATTCTGGCTTCGCTGACGCGGGAACCAGCAATGATGCCCGCGTTAAAGCGCGCCTGCGCAAGACCTACCACACGCAAGGCATCGCGCTCAATTTGCGCCTGATGCTGGGTTGtct       >  1:141809/1‑143 (MQ=255)                                                                                                                    cATTGGCCCGCTCACGCAGCGCGGGGATTCTGGCTTCGCTGACGCGGGAACCAGCAATGATGCCCGCGTTAAAGCGCGCCTGCGCAAGACCTACCACACGCAAGGCATCGCGCTCAATTTGCGCCTGATGCTGGTTTTTCTcc     <  1:337156/143‑1 (MQ=255)                                                                                                                       acccttaagttagcgcttatgggaTTCTGGCTTCGCTGACGCGGGAACCAGCAATGATGCCCGCGTTAAAGCGCGCCTGCGCAAGACCTACCACACGCAAGGCATCGCGCTCAATTTGCGCCTGATGCTGGTTTTTCTCCGcc  <  2:269378‑M2/119‑1 (MQ=255)                                                                                                                                               |                                                                                                                       AACGCTGAATAAACGTTAAGTATAGAAGGCGCATATCATCAGCGTTTGTACCCCCCGCCCAACGCACCAGTGAGTTGAATGGAGGCATCCAGCCACTGCCCTTGCAATAACAGGCCATTGGCCCGCTCACGCAGCGCGGGGATTCTGGCTTCGCTGACGCGGGAACCAGCAATGATGCCCGCGTTAAAGCGCGCCTGCGCAAGACCTACCACACGCAAGGCATCGCGCTCAATTTGCGCCTGATGCTGGTTTTTCTCCGCC  >  NC_000913/2227285‑2227545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.