New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4306577 =	30 (1.450)	3 (0.150)	3/250	NT	9.9%	coding (21/1986 nt)	yjcS	alkyl sulfatase
	?	NC_000913	4306596 =	26 (1.330)					coding (2/1986 nt)	yjcS	alkyl sulfatase

AATTCTGATTAACCTGTTGGGTATATTGAGTGGCGGCTTTCGCTTCCTCTTTCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGCGTTATCATAATTGGGAAATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCATTTTATTAGGCATT  >  NC_000913/4306459‑4306737                                                                                                                                          |                                                                                                                                              cgctcacacttccacttattaaagtcgcaatttcccaattatgataacgccagctttaaatgacgtatcttgcatgtattacatatttacgacataaatgataaatggagatttatatGAATAACCGAGAGTTATTCATATaa                                                                                                                                          >  2:215263‑M1/119‑143 (MQ=255)  aTTCTGATTAACCTGTTGGGTATATTGAGTGGCGGCTTTCGCTTCCTCTTTCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATaaa                                                                                                                                         >  1:96279/1‑143 (MQ=255)     cttaTTAACCTGTTGGGTATATTGAGTGGCGGCTTTCGCTTCCTCTTTCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAAtct                                                                                                                                      <  2:199655/140‑1 (MQ=255)            aCCTGTTGGGTATATTGAGTGGCGGCTTTCGCTTCCTCTTTCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATCACCGAGAGTTAATCATATAAGTCTCcaatta                                                                                                                               >  2:133470/1‑143 (MQ=255)               cttattaaagtagcagtttcccaatgatgataacgctagcgttaaatgacgtattttgcatggattacatatttacgacataaatgataaatggagatttatatGAATAACCGAGAGTTATTCATATAAATCTCcatttatca                                                                                                                            >  2:360811‑M1/105‑143 (MQ=255)                  tGGGTATATTGAGTGGCGGCTTTCGCTTCCTCTTTCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCcatttatcattt                                                                                                                         <  1:351079/143‑1 (MQ=255)                       atatTGAGTGGCGGCTTTCGCTTCCTCTTTCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGATAAAACGGAATAACGGAGAGTTATTCATATAAATCTCTATTTATAATTTATGTc                                                                                                                    >  1:65537/1‑143 (MQ=255)                         atTGAGTGGCGGCTTTCGCTTCCTCTTTCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATCACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATCTAAATCTCCATTTATCATTTATGTCgg                                                                                                                  >  1:104552/1‑142 (MQ=255)                              gTGGCGGCTTTCGCTTCCTCTTTCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGACCGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTAACATTTATGTGATAAata                                                                                                             >  2:352287/1‑143 (MQ=255)                                        tatgataacgccagctttaaatgacgtattttgcatggattacatatttacgacataaatgataaatggagatttatatGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCAt                                                                                                   >  1:359158‑M1/80‑143 (MQ=255)                                        tCGCTGCCTCGCTCGCGTTAGCGGTATCTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCAt                                                                                                   <  2:21728/143‑1 (MQ=255)                                         cGCTTCCTCTTGCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATg                                                                                                  <  2:20714/143‑1 (MQ=255)                                           cTTCCTCTTTCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCa                                                                                                >  1:300245/1‑143 (MQ=255)                                            ttCCTCTTTCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCaa                                                                                               >  1:214726/1‑143 (MQ=255)                                            ttCCTCTTTCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAAAAATCCGGCTCGAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCAGTGATGTCGTAAATATGTAATCCAGGCaa                                                                                               >  2:154451/1‑143 (MQ=255)                                                       cggtaccGGTATTTACCATCATGCTGCTGGCGGCAGTTAACTCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCAGTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCAtt                                                                                    <  2:288580/137‑1 (MQ=255)                                                       cgTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCAtt                                                                                    >  1:353322/1‑143 (MQ=255)                                                        gTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCTCTTTATCGTTTATGTCGTAAATATGTAATCCATGCAAAATACGTCAttt                                                                                   >  1:376256/1‑143 (MQ=255)                                                            gCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGGATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAg                                                                               >  2:66366/1‑143 (MQ=255)                                                            gCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTGTTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAg                                                                               >  1:208580/1‑143 (MQ=255)                                                                 aTTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGc                                                                          <  1:297068/143‑1 (MQ=255)                                                                 aTTTACCAGCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGc                                                                          <  1:209414/143‑1 (MQ=255)                                                                          atggattacatatttacgacataaatgataaatggagatttatatgaataactctcggttattcATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGCGTTATCATa                                                                 >  1:359158‑M2/65‑143 (MQ=255)                                                                            tGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGCGTTATCATaac                                                               >  2:310660/1‑142 (MQ=255)                                                                            tGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGCGTTATCATAAt                                                               >  1:58260/1‑143 (MQ=255)                                                                                       gcAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAACTCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGCGTTATCATAATTGGGAAATTGc                                                    >  1:322018/1‑143 (MQ=255)                                                                                        cAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATGTATCATTTATGTCGTAAATATGTAATCCATCCAAAATACGTCATTTAAACCTGGCGTGATCATCATTTGGAAATTGCg                                                   >  2:87975/1‑143 (MQ=255)                                                                                                   tgataaatggagatttatatgaataactctcggttattcATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAACGCTAGCGTTATCATCATTGGGAAACTGCTACTTTAATAAg                                        >  2:360811‑M2/40‑143 (MQ=255)                                                                                                        aaTCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGCGTTATCATAATTGGGAAATTGCGACTTGAAAAAGTGGaa                                   >  2:128130/1‑143 (MQ=255)                                                                                                        aaTCCTGCGCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGCGTTATCATAATTGGGAAATTGCGACTTTAATAAGTGGaa                                   >  2:179375/1‑143 (MQ=255)                                                                                                                tCAAACGGAAGAACCGAGAGTTATTCATATAAATCTCCATGTATCATTTATGTCGTAAATATGTAAGCCATGCAAAATACGTCATTTAAAGCTGGCGTTATCATAATTGGGAAATTGCGACTTTAATAAGTGGAAGTGTGAGc                           <  1:133470/143‑1 (MQ=255)                                                                                                                 ttatatgaataactctcggttattcATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATACATGCAAGATACGTCATTTAAAGCTGGCGTTATCATAATTGGGAAATTGCGACTTTAATAAGTGGAAGTGTGAGCg                          >  2:215263‑M2/26‑143 (MQ=255)                                                                                                                             CCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGCGTTATCATAATTGGGAAATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGccagt              <  1:354974‑M1/143‑3 (MQ=255)                                                                                                                              cGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGCGTTATCATAATTGGGAAATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCAttt             >  1:219850/1‑143 (MQ=255)                                                                                                                                   gagattcATAGAAATCACCATTTATCATTTATGTCGTAAATATGTAAGCCATGGAAAATACGGCATTTAAAGCTGGCGTTATCAGAAGTGGGAAATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCATTttatta        <  2:381587‑M2/136‑1 (MQ=255)                                                                                                                                     tattcATATAAGTCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAGATACGTCATTTAAAGCTGGCGTTATCATAATTGGGAAATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCATTTTATTAgg      <  2:14777‑M2/138‑1 (MQ=255)                                                                                                                                     tattcATATAAATCTCCAGTTATAATTTATGTCGTAAATATGTAATCCATGCAAAATACGGCATTTAAAGCTGGCGTTATCATAATTGGGAAATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCATTTTATTAgg      <  1:4696‑M2/138‑1 (MQ=255)                                                                                                                                         cATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGCGTTATCATAATGGGGAAATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCATTTTATTAGGCAtt  <  2:104552‑M2/142‑1 (MQ=255)                                                                                                                                          |                                                                                                                                              AATTCTGATTAACCTGTTGGGTATATTGAGTGGCGGCTTTCGCTTCCTCTTTCGCGTTAGCGGTATTTACCATCATGCCGCTGGCGGCAGTTAACGCAATAACAATCCTGCTCAAACGGAATAACCGAGAGTTATTCATATAAATCTCCATTTATCATTTATGTCGTAAATATGTAATCCATGCAAAATACGTCATTTAAAGCTGGCGTTATCATAATTGGGAAATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCATTTTATTAGGCATT  >  NC_000913/4306459‑4306737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.