| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,323,330 | C→T | 29.5% | intergenic (+79/‑117) | atoC → / → atoD | DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,323,330 | 0 | C | T | 29.5% | 23.3 / 10.6 | 25 | intergenic (+79/‑117) | atoC/atoD | DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base C (11/6); new base T (4/3); total (16/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
AGTCGCCGTGCATTGATGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAATTGATGACAT > NC_000913/2323192‑2323468 | aGTCGCCGTGCATTGATGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAAt > 1:172149/1‑143 (MQ=255) tcgttGCTGTATTTACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCtt < 2:277348/140‑1 (MQ=255) cATTGATGTATAAACTCCAGGAATACGGTATCGATCCGGCTGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTc < 1:31051/143‑1 (MQ=255) gTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATACTCa > 2:336298/1‑143 (MQ=255) tataAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCat > 1:329788/1‑142 (MQ=255) ataAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCGCATTCTCCTTATAAATCCCCATGCAATTTATCCCTTCATATTCagt > 1:386428/1‑141 (MQ=255) aGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCTCCATCCAATTTACCCCGTCATATTCAATTAGTGAAAt > 2:96249/1‑143 (MQ=255) gtCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCa < 1:258342/142‑1 (MQ=255) tCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGATaaataaataaataaaa > 2:36368/1‑139 (MQ=255) ccGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAACAAtc > 2:43660/1‑143 (MQ=255) cggcggATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAAtct < 2:141692/143‑1 (MQ=255) ggATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCACTTTATCCCTTCCTATTCAATTAGTTAAATAACTAAATACAATAATATCAtt > 1:187681/1‑143 (MQ=255) ggATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCCCTCCTTCTCCTTATATATCCCCATCCAATTAATCAAATAATAAACAAATAAATAAATAACTAAATCAAATAATATCAtt > 1:2553/1‑143 (MQ=255) aaaCTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCACTAATCTCATTCTGGCACTCCCCTTg > 1:57775/1‑143 (MQ=255) cTATGCTGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGc < 1:267317/143‑1 (MQ=255) cAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCATGAc > 2:232862/1‑143 (MQ=255) tGCGCAATTTTCTGCATAGCCGCTCATTCTCCGTATAAAGCCCCATTCAATTTAGCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCAGTCTGGCGCTCCCCTTGCTATTGCCTGACTGTACCCACAACGgt < 1:369213/143‑1 (MQ=255) cAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACCACGGCGTAt > 1:179720/1‑143 (MQ=255) aaTTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACTACGGTGTTTg > 1:154871/1‑143 (MQ=255) aaTTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATg > 1:14771/1‑143 (MQ=255) tGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATTTTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACTCACAACGGTGTATGCAAGAgg < 2:104350/143‑1 (MQ=255) cTCATTCTCCTTATAAATCCCACTTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCACACTATACCCACAACGGTGTATGCAAGAGGGATAAAAAAt < 2:324745/143‑1 (MQ=255) ttATAAATCCCCATTCAATTTATCCCTTAATATTCAATTAGTTAAATAACTAAATACAATAATATCATTCTGGCACTCCCCTTGCTATTGACCCACTGTACCCACAACGGTGTATGCAAGAGGCATAAAAAATGAAAACaaaa > 2:119016/1‑143 (MQ=255) tataAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAAt < 1:265967/143‑1 (MQ=255) ccATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGAATGTACCCACAACGGTGTCTGCAAGAGGGATAAAAAATGAAAACAAAATTGATGACAt > 2:123263/1‑143 (MQ=255) | AGTCGCCGTGCATTGATGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAATTGATGACAT > NC_000913/2323192‑2323468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |