| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 568,268 | IS1 (–) +9 bp | intergenic (+21/‑39) | renD → / → emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 19796 = | NA (NA) | 49 (0.730) | 41/280 | 0.6 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 568276 | 0 (0.000) | intergenic (+29/‑39) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 258675 | NA (NA) | 57 (0.840) | 46/282 | 0.4 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 568268 = | 0 (0.000) | intergenic (+21/‑47) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE | |||||
AGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/19938‑19796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTCCCATTC < NC_000913/568276‑568137 AGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC > 2:53717/1‑143 cgtCATAACCTGAATTTGAGGCAGCATCTGTCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTA < 1:223868/140‑1 ACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAATTCGTTGTCGTTCTCAAAATCGTTGTATCTGCATGACAATGTTTTCGGGAATTATCTGAACAGAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTG < 1:923988/143‑1 CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAGAATCGGTGGAGCTGCCTGACAAAGTCATCGGGCATTATCTGAACATAAAACACTAGCAATAAGCTGGAGGCATTACCTACAGGTTGAA > 2:1114250/1‑143 CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCACTATCTGAACATAAAACACTATCAATAAGTTGGAGACATTACCTACAGTTTGAA > 2:1125574/1‑143 CTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAAC < 1:1057810/143‑1 GGCAGCCCCTGGGCCGGCTGGGACGGAAGTCGCTGTCGCTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCAC < 2:785603/143‑1 CTGGCACGGCTGGGACGGAAATCGCTGTAGTTGTATAAGTTGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTCGAGTCATTACCTACAGTTTGAACTCAACTCAACTGTTTCA > 2:85269/1‑143 CACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATAAATAAGTTGGAGTCATTACATACAGTTTGAACTCAACTCACATGTTTCAT‑CAT > 1:367031/1‑143 ACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAATCATTACCTACAGTTTGAACTCAACTCAACTGTTTCAT‑CATT > 1:456113/1‑143 GACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCC > 1:1266285/1‑143 AGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCTTTATTATGTTATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGAT < 1:768577/143‑1 AGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGTCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGAT < 1:325237/143‑1 CGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGTGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTT > 1:255244/1‑143 CGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACATACAGTTTGCAATCAATTTACCTGTTTCAT‑CATTGTGTTCCCATTGATGTg > 1:217043/1‑142 GCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGATCCCATCGATGTTC > 2:1133428/1‑143 CTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTAAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGAAGTTCT > 2:1032878/1‑143 TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATAC < 1:53717/143‑1 AAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCT < 1:701278/143‑1 atttGTGGAGCTTGATGACAAATTCATCGGGCATTATCTGAACATAACACACTATCAATAAGTTGGTGTCATTACCTATAGTTTGATCTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATATCCTCA < 2:104847/139‑1 ATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGCGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATTCCCTCA > 2:778637/1‑143 ATCGGCGGTGCTGCATGACAAAGTCATCGGGCATTATCTTAACATAAAACACTATCATTATTTTTGTTTTATTACTTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCA < 1:607721/143‑1 GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGATGCCCTTGATGCTATTACTGAGACCCTCAATAC > 2:1081374/1‑143 gggGCTGTATGTCATAGTCAGCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTGGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTTATGTTCTTTTATATACCCTCAATACCC < 2:512212/140‑1 GGAGCTGCATGACAAAGTCATCGTGCATTATCTGAATATGAAACACTATCAATAAGGTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTGTCAT‑CATTGTGTTCCCATTGATTTTCTTTTATATACCCTCAATACCC < 2:277530/143‑1 AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCCACTCACCTGGTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCCATACACGT > 2:737667/1‑143 TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTGCCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTC < 2:432264/143‑1 CATGACAAAGTCATCGGTCATTATCTGAACATAATACACTATCAATAATTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCAT < 1:17752/143‑1 GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGC < 2:773896/143‑1 actAAGTCATCGGACATTATCTCAACATAAAACACTATCAATAAGTTGTAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATACTTTGT‑TGCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCG < 2:255244/140‑1 ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGTGTCATTACCTACAGTTTGATCTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCG < 1:798415/143‑1 ACAAAGTCAGCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGTAGTCATTACCTACAGTTTGAAGTCAACTCACCTGTTTCAT‑CAGTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCG < 1:1155811/143‑1 catAGTCATCGCGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGG < 2:617897/140‑1 AAGTCATCGTGCATTATCTGATCGTAACACACTATACATAAGTTGTAGTCATTACCTACAGTTTGAACTCAACTCACCAGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCA < 2:487594/143‑1 tTCATCGGTCATTATTTGAACATTATACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACT < 1:1239544/142‑1 cactTTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGA < 2:722337/139‑1 TATCTCAACATAAAACACTATCAATAAGTTGTTGTCATTTCCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTC < 1:142754/143‑1 TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATATCCGTTTCATCACGGCACTCTGTCGACACTCCTTA > 2:654515/1‑143 ACATAGAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAA < 2:864646/143‑1 TAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATC < 1:957086/143‑1 AAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGTCGACACTCCTTAAAAATCA > 2:1235846/1‑143 TATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACACGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGa > 2:966665/1‑142 ATCAATAAGTCGGAGTCATTACCTACAGTTTGAACTCAACTCACCTTTTTCAT‑CATTGTGTTCCCATTGCTGGTCCCCTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTG < 1:777109/143‑1 TCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATAACATAAATACACGTTTCATAACGGCACACTGGCGACACTCCTTAGAAATCAGATTAGTGC > 1:764676/1‑143 AGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTTTGTTCTCTTTGATGTTATTTAATATACCCTCAATACCCGTTTCATCGCGGCAGGCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCT < 1:449859/143‑1 TTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTCAAAATCAAATCAGTGCTCACCTct > 2:1139002/1‑141 GTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATTTCTTTTTCATCGTGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTC < 1:660833/143‑1 GTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTC < 1:1166441/143‑1 ATTACCTAGAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATCCCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTCCCA < 2:776507/143‑1 ACCTACAGTTTGAACTCAACTCATCTGTTTCAT‑CATTGGGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACCCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTCCCATTC < 2:325425/143‑1 AGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/19938‑19796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTCCCATTC < NC_000913/568276‑568137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |