New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 22874440 (0.590)16 (0.250) 9/270 6.1 29.5% intergenic (+82/‑12) rrlH/rrfH 23S ribosomal RNA/5S ribosomal RNA
?NC_000913 2726224 = NA (NA)intergenic (‑36/+57) rrfG/rrlG 5S ribosomal RNA/23S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.

TGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAG  >  NC_000913/228603‑228884
                                                                                                                                             |                                                                                                                                            
tgtgtAAGCGCAGCGATTCGTTAAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACACCGCCAACTCTGTTTTGTCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa                                                                                                                                             <  2:1231816/143‑1 (MQ=11)
        cgcAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACACCGCCGAAGCTGTTTTGGCGGATTGCGAGAAGATTTTCCGCCTGATACAGACTAAATCAGAACGAAAAAGAGGTAAGATAAAACAGaa                                                                                                                                     >  1:1233382/1‑143 (MQ=11)
        cgcAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGaa                                                                                                                                     <  2:748660/143‑1 (MQ=32)
         gcAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCAGGGTTGGCGGATTGAGAGAAGATTTTCAGCNTGATACAGAGTAAATCAGAACGCAGAAGCGGACAGATAAAACAGaac                                                                                                                                    >  2:73382/1‑142 (MQ=11)
          cAGCGATGCGTTGAGCGAACGGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTGGGCGGATTGAGAGAAGATTTTCAGCCTGTTTCAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAtt                                                                                                                                   <  2:887784/143‑1 (MQ=11)
           aGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaaaa                                                                                                                                          >  2:187522/1‑135 (MQ=33)
           aGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaaaa                                                                                                                                          <  1:187522/135‑1 (MQ=32)
           aGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGGAGAGAAGAGTTTAAGCCTGATACAGATTAAATCAGAACGGAAAAGCGGTCTGATCAAACAGAAttt                                                                                                                                  >  2:981818/1‑143 (MQ=11)
             cGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGc                                                                                                                                <  2:852811/143‑1 (MQ=32)
                 gCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGCGAGAAGATTTTCAGCCTTATACAGATTAAATCAGAACACAGAAACGGAATGATAAAACAGAATTTGCCtag                                                                                                                            >  1:429681/1‑141 (MQ=11)
                    ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcgg                                                                                                                         <  1:799735/143‑1 (MQ=32)
                         cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTa                                                                                                                    >  2:977483/1‑143 (MQ=34)
                              cgcttcTAATGAACCGTGAGGCTTAACCTTACAACGCCGACGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGcgcg                                                                                                               <  2:732534/138‑1 (MQ=19)
                              cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGATGCTGTTTTTGCGGATTGAGAGAAGATTTTCAGTCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGcgcg                                                                                                               <  1:484212/143‑1 (MQ=255)
                                 tACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCggtg                                                                                                            <  2:893807/143‑1 (MQ=34)
                                 tACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATAAGAAAGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGACGTAGCGCggtg                                                                                                            >  1:978518/1‑143 (MQ=255)
                                     aaTGAACGGTGAGGCTTATCATTACATCGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACATATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc                                                                                                        <  2:210104/143‑1 (MQ=11)
                                      aTGAACCGTGAGGCTTAAACTTACAACGCCGAAGCTGTTTTGGCGGATTGAGCGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGAAGCGCGGTGGTgcc                                                                                                       >  2:80410/1‑143 (MQ=255)
                                        gAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTATTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAc                                                                                                     >  1:801651/1‑143 (MQ=21)
                                              tgtggCTTAACCTTACAACGTTGAAGTTGTTTTGGTTTATTGAGAGAAGTTTTTCAGCTTGATACAGATCAAATCAGAACGCAGAAGCCGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAcc                                                                                               <  1:170403/140‑1 (MQ=11)
                                              tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCCGCCTGATACAGATTAAATCAGAAAGAAGAAGCGGTATGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAcc                                                                                               >  1:354/1‑143 (MQ=255)
                                               gtgccTTAACCTTACAACGCCGAAGTGGCTATGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTATATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAccc                                                                                              <  2:934951/139‑1 (MQ=11)
                                                  gCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCACAt                                                                                           >  2:641322/1‑143 (MQ=21)
                                                    ttAACCTTACGACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGGTTTTCAGCCTGATACAGATTAAATCAGAACGCCGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGc                                                                                         <  2:588247/143‑1 (MQ=255)
                                                    ttAACCTTACAACGCCGAAGCTGTTTTGGCGTATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGc                                                                                         <  2:757486/143‑1 (MQ=21)
                                                         cTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAAc                                                                                    >  1:643690/1‑143 (MQ=34)
                                                              aaCGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGa                                                                               <  2:711562/143‑1 (MQ=34)
                                                               aCGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCTGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                              <  2:38531/143‑1 (MQ=21)
                                                                     atgCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaaa                                                                        <  2:1005174/141‑1 (MQ=21)
                                                                     aaGTTGTTTTGGTGGATTGAGGGAAGATTTTCAGGCTGATACAGATTAAATCAGATCGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaaa                                                                        <  2:1097138/143‑1 (MQ=11)
                                                                       gCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCTCATGCCGAACTCAGAAGTGaaaag                                                                      >  1:787535/1‑141 (MQ=18)
                                                                         tGTTTTGGCTTATTGAGAGAATATTTTCATCCTTATACAGATTAAATCATATCGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGcc                                                                    <  1:692722/143‑1 (MQ=11)
                                                                         tGTTTTGGCGGATTGAGAGGCGGTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGcc                                                                    <  2:695531/143‑1 (MQ=12)
                                                                           ttttGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCAAACTGACCCCATGCCGAACTCAGAAGTGAAACGCCGt                                                                  >  1:344473/1‑143 (MQ=17)
                                                                              tGGGGGATTGAGAGAAGATTTTCAGCGTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAGAAAACAGAATGTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgc                                                               <  2:22366/143‑1 (MQ=255)
                                                                                  ggATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCGGATAAAACAGAATTTGCCTGGCGGCCGTAGCACGGTGGTCACACCTGACCCCATGCCGAACTCAGAAGTGAAAAGCCGTAGCGCCg                                                           >  2:478564/1‑143 (MQ=255)
                                                                                                                  ttaatgcAGAACGCAGAGGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTa                           <  2:105951/137‑1 (MQ=0)
                                                                                                                                           tctAAAACAGCAGTCGTCTGGCGGCCGTGGCGCGCTGGTCTCACCTGACCCCATGCCGAACTCAGAATGGAAACGCCGTAGCGCCGCTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAg  <  2:370112/141‑1 (MQ=11)
                                                                                                                                           gATAAAACAGAATTTGCCTGGCGGACGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTATCGCCGATGGTAGAGTGGGGTCTCGCGATGCGAGAGTAGGGAACTGCCAGGGATCAAAGTAAg  >  2:806238/1‑143 (MQ=11)
                                                                                                                                           gATAAAACAGAATTTGATGTGCTGACGTATCTCGGTGGTCTTACCTGACCCCATTCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAg  <  1:196529/143‑1 (MQ=11)
                                                                                                                                             |                                                                                                                                            
TGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAG  >  NC_000913/228603‑228884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.