| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,323,330 | C→T | intergenic (+79/‑117) | atoC → / → atoD | DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,323,330 | 0 | C | T | 97.9% | 119.1 / ‑6.6 | 48 | intergenic (+79/‑117) | atoC/atoD | DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (21/26); minor base A (0/1); total (21/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
TCAGTCGCCGTGCATTGATGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAATTGATGACAT > NC_000913/2323190‑2323468 | tCAGGCGCCGTGCATTGATGTATAAACGCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACGTGCTATGCAGTAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCa < 2:393431/143‑1 (MQ=255) aGTCGCCGTGCATTGATGTATAAACTCCAGGAATACGGTATCGATCCGGCGTATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAAGTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAAt < 1:48932/143‑1 (MQ=255) gCATTGATGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCtt < 1:983535/143‑1 (MQ=255) cATTGATGTATAACCTCCAGGAATACGGTATCGATCCGGCGGATTTACAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTc < 2:1253679/143‑1 (MQ=255) aTGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAATCTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATAtt < 1:1030787/143‑1 (MQ=255) aTGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTAGCAGAGTGCGCAATTATTTAACTTATTTCTCATTCTCCTTCTAAATCACCATTCAATTTCTCCCTTCACAtt > 2:882369/1‑143 (MQ=255) aaCTCCAGGCATACGGTATCGATCCGGAGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAg < 2:628129/143‑1 (MQ=255) aaCTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCGTATAAATCACAATTCAATTTATCCCTTCATATTCAATTac > 1:807889/1‑142 (MQ=255) cTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCAATTCAATTTATCCCTTCATATTCAATTAGtt > 1:711490/1‑143 (MQ=255) cTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTCCACAGTGCGCAATTTTCTGCATAGCCGCCCATTCTCCTTCTCAATCCCCATTCAATTCATCCCTTCATATTCCCTTAGtt > 2:456466/1‑143 (MQ=255) tCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGTAATTTTCTGCAAAGCCGCTCATTCTCCTTATAAATCACCATTCAATTTATCCCTTCATATTCAATAAATTa > 1:275564/1‑143 (MQ=255) gAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATATTCTGCATAGCCGCACATACTCCACATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATaa < 1:44423/143‑1 (MQ=255) tACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTa < 2:1109264/143‑1 (MQ=255) aTCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCa < 2:396410/143‑1 (MQ=255) gATCCGGCGAATGTGTAATACCAAAACTTGCTAAGCAGAAATTTGCAAAGTGCACAATTTTGTGCATAGCCGCTCATTCTCCTTATAAATCCCCCATCAATGTAACCTTTTATATTCAATTAGTTAAATAACTAAATCCagta > 2:1138532/1‑143 (MQ=255) aTCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTACATCCaataa > 2:1178607/1‑143 (MQ=255) ggATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAATTCCCCATTCAATTTATGCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCAtt < 1:1202882/143‑1 (MQ=255) ggATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCAtt < 2:203942/143‑1 (MQ=255) ggATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGCGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCAtt < 1:618378/143‑1 (MQ=255) gTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTgg < 1:577462/143‑1 (MQ=255) gTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCGTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATACCTAAATCCAATAATCTCATTCTgg > 2:884714/1‑143 (MQ=255) aaCACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATCACTAAATCCAATAATCTCATCCTGGCAcg > 2:26882/1‑142 (MQ=255) acCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCTATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTAATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTccc > 2:596353/1‑143 (MQ=255) ccAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTCAATCCAATAATCTCATTCCGGCACTcccc > 2:362708/1‑143 (MQ=255) cAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCt > 2:1129030/1‑143 (MQ=255) aaaCTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTg < 2:83186/143‑1 (MQ=255) aaCTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGc > 1:850570/1‑143 (MQ=255) tGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTg > 1:218688/1‑143 (MQ=255) aGAAATTTGCACAGTGCGCAATTTTCTGCATAACCGCTCATTCTCCTTATAAATCCCCATTCAATTAATCCCTTCATATTCAATTAGTTAAATAACTAAATCCACTAATCTCATTCTGGCACTCCCCCTGCTATTCCCTgcaa > 2:179008/1‑140 (MQ=255) aGAAAATTGCGCACTGTGCAAATTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCCCTCAATTTCTCCCTTCCTATTCAATTAGCTAAATAACAAAATCAAATAAACTCATTCTAGCACTCCCCTTGCTATTCCCTGACt > 1:1002250/1‑143 (MQ=25) tttGCACAGTGCGCAATTTTCTGCATAGTCGCTCATTCTTCTTATTAATCCCTATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTAcc < 1:150851/143‑1 (MQ=255) tGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCca < 2:940609/143‑1 (MQ=255) ctGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATATATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACgg < 2:44783/142‑1 (MQ=255) tGCGCAATTTTCGGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGgt < 2:833327/143‑1 (MQ=255) gcAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGAGTa > 1:1198877/1‑143 (MQ=255) cTGCATAGGCGCTCATTCTCCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAagag < 2:667899/143‑1 (MQ=255) cTGCATAGCCGCTCCTTCGCCTTATAAATCCCCATTCAATTTATCCCTTCCTATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCTACAACGGTGTATGCAagag < 2:1055242/143‑1 (MQ=255) tAGCCGCTCATTCTCCTTATAAATCCCCATTCAATGTAAGCCTTCAGATTCAATTAGTTAAATAACTAAATCCAAGAAGCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATa < 1:490604/143‑1 (MQ=255) ccGCTCATTCTCCTTATAAATCCCCATAAAATGTATCTCTTCCTATTCGATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATaaaa < 2:807889/143‑1 (MQ=255) gCTCATTCTCCTTATAATTCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATaaaaaa < 2:356337/143‑1 (MQ=255) cttaTTCTTCTTATTAATCCCCATTCTATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCTCCTTGCTATTGCCTGACTGTACCCACTACGGTGTATGCAAGAGGGATAAAAAAt < 2:1115027/140‑1 (MQ=255) cTCATTCTCCTTATACATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAAt < 2:130189/143‑1 (MQ=255) tctcCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGATATAGCCTGAATGTACCCACCACAGTGCATGCAAAAAGGATAAAGAATGaaaa > 2:337998/1‑143 (MQ=255) tcCTTATAAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCACCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAACCa > 1:301145/1‑143 (MQ=255) atttATAAAACCCCTTTCTTTTTATCCCTTCATATTCGATTAGTTAAATAACTAAATCCAATAATCTCAGTCTGGCACTCCCCTTGCTATTGCCTGACGGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACaa < 1:834189/141‑1 (MQ=255) tataAATCCCCATTCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAAACTCATTCTGGCACACCCATTACTATAACCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATAAAAACAAAAt > 1:298298/1‑143 (MQ=255) aactCCCCATTCAATTTATCCTTTCATATTCAATTAGTTAAATAACTAAATCCAATAATTTCATTCTGGCACTCCCCTTGCTATCGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAATtga < 2:604061/140‑1 (MQ=255) ccATTCAATTTATCCCTTCATATTCAATTAGTTAAATTACTACATCCAATAATCTCATTCTAGCACTACCCTTGCTATTGCATGAATGTACACAAAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAATTGATGACAt > 1:235413/1‑143 (MQ=255) | TCAGTCGCCGTGCATTGATGTATAAACTCCAGGAATACGGTATCGATCCGGCGGATGTATAACACCAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATGAAAACAAAATTGATGACAT > NC_000913/2323190‑2323468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |