| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 786,458 | Δ1 bp | 100% | coding (826/1053 nt) | aroG → | 3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 786,458 | 0 | A | . | 100.0% | 150.1 / NA | 34 | coding (826/1053 nt) | aroG | 3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (20/14); total (20/14) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GCCATATCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCAAAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACGGT > NC_000913/786318‑786595 | gCCATATCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCaaa > 2:441177/1‑143 (MQ=255) ctatatCATTCTGCGTGGCGGTAAAGAGTCTAAATACAGCGCGAAGCACGGGGGAGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCaaaa < 1:17649/141‑1 (MQ=255) ccATATCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCaaaa < 1:752345/143‑1 (MQ=255) ccAGATCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCaaaa < 1:529801/143‑1 (MQ=255) gtgtGCGCGGCGGTAAAGAGCCTCACTATAGCTCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAgatgg < 2:94462/140‑1 (MQ=255) cTGCGCGGCGGTAAAGAGCCTATCTACAGCTCGTAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAgatggat < 1:15711/143‑1 (MQ=255) gcgcGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCATCCAAACAATTC‑AAAAGCAGATGGATGt > 1:387546/1‑143 (MQ=255) gcgagggTAAAGAGAATAAGTACAGCTCGAAGGAGGATGGTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGttt < 1:327583/138‑1 (MQ=255) gctggTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTtgt < 2:609422/140‑1 (MQ=255) agCCTAACTACAGCGCGAAGCACGTTGCGGAAGTTAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGttt < 2:145070/143‑1 (MQ=255) ccgaaCTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGc < 1:757498/140‑1 (MQ=255) tAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATATTTGTGCTGACGTTTGCca > 1:688369/1‑143 (MQ=255) aaCTACAGCGCGAAGCACGTTGCGTAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCcag < 1:497802/143‑1 (MQ=255) cTACAGCGTGAAGCGCGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCcagca < 2:691714/143‑1 (MQ=255) gAAGCACGTTGCTGAACTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCgg < 2:165477/143‑1 (MQ=255) cGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGAGTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGa < 1:11456/143‑1 (MQ=255) gAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCATCCATGCTAACTCGTCCCCACAAAGC‑AAAAGCAGATGGATGGTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAGGGCCcttgt > 2:670338/1‑141 (MQ=255) aaaGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCattatt > 1:492007/1‑143 (MQ=255) agGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGAGTTCAGCCATGCTAACTCGTCCAAACAAGTC‑AAAAGCAGATGGATGTTTGGGCGGACTTTTGCCAGCATATTGCCGGTGGCGAAAAGGCCATTATTGGCGt < 1:336651/143‑1 (MQ=255) cTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑ACAAGCAGATGGATGTTGGTGCTGACGTTTGCCAGCAGATTGACGGTGGCGAAAAGGCCACTATTGACGTGaag > 2:605400/1‑141 (MQ=255) cTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCgggctg > 2:625484/1‑138 (MQ=255) aaCAAAGCAGGCCTGCGAAGGGAAGGGGTGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGAtggtg > 2:675112/1‑143 (MQ=255) aaaGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAGACAATTC‑AAAAGCACATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGCAAAGGCCATTATTGGCTTGATGGTGGaa > 1:284420/1‑143 (MQ=255) caGCATGCCTGCCAGCAGAGATGAGGAGAGATTTCAGCCATGCTAACTCGTCCAAACAATGC‑AAGAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGaaa < 2:323265/142‑1 (MQ=255) aGCAGGCCTGCCAGCACAGGTGCTGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCATACGGATGTTTGTGCTGACATTTGCCAGCAGATTGCCGGTGGCGAAAAGGACCCTATTGGCGAGCTGGTGGCAAg > 2:710249/1‑143 (MQ=255) gatgatCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑TAAAGCAGATGGATGTTTGTGCTGACGTTTGACAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCa < 1:454422/143‑1 (MQ=255) atCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCagaga > 1:691661/1‑142 (MQ=255) atCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGc > 1:366827/1‑143 (MQ=255) atCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGc > 1:657708/1‑143 (MQ=255) tttCATCTATGCTAACTCGTTAAAACAATTC‑AAAAGAAGATGGATGTTGGTGCTGAGGGTAGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCga < 1:409714/143‑1 (MQ=255) tttCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCga > 1:758979/1‑143 (MQ=255) tttCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGAATCga > 1:760209/1‑143 (MQ=255) ccATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGTTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCgg > 1:417672/1‑143 (MQ=255) aCTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGc > 2:383867/1‑143 (MQ=255) aCTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGACAAGCAGAGCATCGAAAGCGGGGAGccac > 2:363515/1‑141 (MQ=255) tCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGCAGcagaac > 2:448407/1‑138 (MQ=255) gTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGCGAGCGGGGAGCCGCTGGc > 1:503074/1‑143 (MQ=255) cAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACGGt > 1:526610/1‑143 (MQ=255) | GCCATATCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCAAAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACGGT > NC_000913/786318‑786595 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |