New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	1798 (48.410)	253/262	NT	98.3%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	32 (0.860)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

AAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAG  >  NC_000913/566647‑566903                                                                                                                                   |                                                                                                                               aaaTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTGATTACCTGGGGACGCATAAGAGCTGCTGTGCAAAGGACGTTGCCGCGGTAACAGGAGCAGCCGAAAGCCGACGTTAccaac                                                                                                                    >  2:213390/1‑140 (MQ=255)    ttAAAGCTAAGTTCGGACTGAACGGAGCACGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGGCCAGGACGTTGCCGCGGTAACAGGCGCAGCCGTAATCTGATCGTACCCAGCaa                                                                                                                 >  1:242618/1‑143 (MQ=255)      aaaGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGGCTGGCAAAGAGGCAATTATTCATTATTTGTGGATCTTTCAGTTCTTCTGTTTACAGGACGGTGCCGCGGTAACAGGCGCAGCCGTAATCTGATCTTACCCAGCAATa                                                                                                               <  1:283957/143‑1 (MQ=255)               ttCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCACTTATTCAGTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTCATCTGATCCTACCCAGCAATAGCGGgcaca                                                                                                      >  2:716467/1‑142 (MQ=255)                tCGGGCTGAGAGGGGCAAGTGTAGGACGGGCGAGGAGGCGATTATTCGTTGCCTGGGGACGCATAAGAGCTTCTGTGCGCAGGACGTTGCGGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgc                                                                                                     <  2:467224/143‑1 (MQ=37)                 cGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATACATAACCTGGGGACGCATAAGAGCTGCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCAGATCTTACCCAGCAATAGTGGACAcgcg                                                                                                    >  2:472985/1‑143 (MQ=255)                          atgttcAAGTTTATGACGGGTAAATAGGCAATTATTCATTACCGGGGGACGCAGAAGAGCTTCTGTGAAAAGGACGTTTCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa                                                                                           <  1:688881/138‑1 (MQ=37)                           ggAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGAGGACACGCGGCTAAGTGAg                                                                                          >  1:44451/1‑143 (MQ=255)                            tagcgtgtgtATGACCCGCAACGAGGCAATTATTCAGTCCCGGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTATCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt                                                                                         <  2:347231/137‑1 (MQ=37)                              gCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACGTGGGGACGCATAAGAGCTGCTGTGCACAGGACTTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGCACACGCGGCTAAGTGAGTaa                                                                                       >  2:205788/1‑143 (MQ=255)                               cAAGTGTATGACGGGCAAAGAGGCAATTATTAATTACCTGGGGACGCATAAGAGCGTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCGGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa                                                                                      >  2:171959/1‑143 (MQ=255)                                aattgtATGATGGGCAAAGAGGCAATGATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc                                                                                     <  1:571080/140‑1 (MQ=255)                                  gtgtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc                                                                                   <  2:706442/143‑1 (MQ=255)                                  gggtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc                                                                                   <  1:71732/141‑1 (MQ=255)                                     tATGACGGGCAAAGACGCAATTATTCTTTACCTGGGGACTCATAAGAGCTTCTGTGCACAGGACGTTGCCGCTGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTTGACACGCGGCTAAGTGAGTAAACTCtca                                                                                <  2:258755/143‑1 (MQ=37)                                                aatcggCAATTATTCATTACCTCGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa                                                                     <  2:645600/139‑1 (MQ=255)                                                  gagGCAATGATTCATTACATGGGGACGCATAAGAGCTTCTGTGCACAGGACGTGGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt                                                                   <  1:451197/143‑1 (MQ=255)                                                        attattCATTACCTGGGGACGCATAAGAGCATCTGTGCACAGGACGTAGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACACAGCAATAGTGGACACGCGGCTAAGTGAGTAAAGTCTCAGTCAGAGGAGACACACATg                                                             >  2:593123/1‑143 (MQ=25)                                                         tctatCATTACCTGGGGACGTATAACAGCTTCTGTGATCAGGACGTTGCCCCGCTAACAGGACAAACCGTAAGCTGATATTACCCAGCAATAGTGGACAACAACTTAAGTTAGTAAACTCTCAGTCAGAGGTGACTCACATGa                                                            <  2:13643/139‑1 (MQ=16)                                                             tCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGCAAACTCTCAGTCAGAGGTGACCCACAGGACaaa                                                        >  2:71523/1‑143 (MQ=255)                                                                           cGCATAAGAGTTTCTGTGGACAGGACGTTGCCGCGGTAACAGGCGTAACCGTAATCTGTTCTTCTCTAGTACTAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa                                          <  2:623984/143‑1 (MQ=18)                                                                               tgagggCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa                                      <  2:684034/138‑1 (MQ=255)                                                                                     cTTCTGTGCACAGTACGTTGCCGCGGTAACAGGCTCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcc                                <  1:282465/143‑1 (MQ=255)                                                                                      ttCTGTGCACAGGACGTTGCCGCGGTAACACGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGACTAAACTCTCAGTCAGACGTGACTCACATGACACAAACACTAACAACCAGTAAAAAAccc                               <  2:55581/143‑1 (MQ=18)                                                                                         tgtgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACCCGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACGCAAATGACAAAAACAGTATCAACCAGTAAAAAACCCCGt                            >  2:636965/1‑143 (MQ=255)                                                                                            gCACAGGACGTCGCCGCGGTAACAGGCGCAACCGTACTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa                         <  1:75401/143‑1 (MQ=255)                                                                                                           gacgTAACTGGCGCAACCGTAATCTGATATTACCCAGCAATAGTGAACACGCGGCTAAGCGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGaa          <  1:399742/140‑1 (MQ=14)                                                                                                            cgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACCCTCAGTCAGAGGAGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCCAAAACAGCATTCGCCtaact         >  2:239373/1‑139 (MQ=14)                                                                                                              gTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGTCTTCATTCACAAAAACATTTTCAACCAGTAAAAAACCTCGTAAACAGCATTCGCCTGAAttt       >  1:348621/1‑143 (MQ=14)                                                                                                                 aCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAACAACAGTATCAACCAGTAAAAAACCCCGTAAACACCATTCGCCTGAAGTTCGc    >  2:451206/1‑143 (MQ=255)                                                                                                                   aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGCGGTGACTCACATGCCAAAACCCGTATCAACCCGTCAAAAACCCCGTAAACAGCACTCGCCTCAAttttccag  >  1:284655/1‑138 (MQ=11)                                                                                                                                   |                                                                                                                               AAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAG  >  NC_000913/566647‑566903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.