New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4254000	NA (NA)	4 (0.110)	4/250	NT	NA	noncoding (32/34 nt)	other	REP317c
	?	NC_000913	= 4254030	NA (NA)					noncoding (2/34 nt)	other	REP317c

ATGTAAAAAAGCCGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCTGCCGGTTCGGCATCGCCGCTATCGCTGATATACC  >  NC_000913/4253891‑4254167                                                                                                                                            |                                                                                                                                          atgTAAAAAAGCCGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt                                                                                                                                        <  1:771114/143‑1 (MQ=255)            ccGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGAGAAGGCGTTTTCGCGGCAACCGGCAATTATATATGAta                                                                                                                             >  1:167727/1‑142 (MQ=38)            ccGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAAGCCTACACAACACATCGCAATATATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGAtt                                                                                                                             >  1:750957/1‑143 (MQ=255)               gatgatCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTAcc                                                                                                                          <  1:153951/143‑1 (MQ=255)                atgatCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTAccc                                                                                                                         <  1:540005/143‑1 (MQ=255)                     ctcccGACTTTCTCATGTGATGCACGATGCGCGGCGATTTTCCTGACTACACAACACATCGCAATTTATTGAACTTGCAGATTATGGAAGGCCGGATAAGGCGTGTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGc                                                                                                                    <  2:137463/140‑1 (MQ=255)                     catcCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCTCACACTATTGAATTTGCAGATTATCGAAGCCCGGACACGGCGCTTTCGCCACATCCGGCCATTCCCCCTGATTAcacctaca                                                                                                                    >  2:554568/1‑136 (MQ=255)                          tgCTGTCTTCTGGGTTGTCGGATGCGCGGCGCTTCTCATGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCTTTTTCGCGGCATCTGGCAATTCTCTCTGATTACCCTTCGCCCTGc                                                                                                               <  2:69703/142‑1 (MQ=38)                          ggCTTTCTTCTGCGTTGCCTGATGCGCGGCGCTTCTCTGGCCTACACAACACATCGCAATTTCTTGAATTTGCAGATTATGGAAGGCCGCATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGc                                                                                                               <  1:235439/143‑1 (MQ=255)                           gCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCg                                                                                                              <  1:470473/143‑1 (MQ=255)                                    ttggTTGCCTGACGCTCGGCGCTTCTCAGGCCTCCACAACACTACGCAATTTTTTTATTCTGCAGATTATGGATTGCCGGATAAGTCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCActct                                                                                                     <  2:186595/141‑1 (MQ=255)                                         tGCCTGCTGCGCTGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGACGGCCGGATAAGCCGTTTTTGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATc                                                                                                <  2:180946/143‑1 (MQ=38)                                             tGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAAATTACTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTAGCCCTGCGTCACCCTCTCAATCGTCa                                                                                            >  2:264100/1‑143 (MQ=39)                                               aTGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATATATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCCATTCTCTATGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCaca                                                                                          >  2:253419/1‑141 (MQ=255)                                                      gctcTTCTCAGGTCTATCCTACGCATCGCTAGTTATTGTAGTTGCATAGTATGGACGGCCGGATAAGGCGTTTTCTCCGCATCCGGCAATCCTCGCTGAGTTTGTTTCGTCCTGCGTCGCACTCTCAATCGTCAAACGCACGt                                                                                   <  2:416446/140‑1 (MQ=255)                                                      gcgcTTCTCGGGCCTACGCAACACATCGCAATTTATGGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGt                                                                                   <  2:418414/143‑1 (MQ=255)                                                      gcgcTTCTCAGGCTTACACAACGCATGGCAATTTATTAAATATGAGTGTTATGGAAGTCCGGATAAGGCGTTTTCGCTGTATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGt                                                                                   <  2:260220/143‑1 (MQ=255)                                                       cgcTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCACCGCATCCGGCAATTCTCTCTGATTACCCTTCGCACTGCGTCGCACTCTCAATCGTCAAACGCACGTc                                                                                  >  2:382316/1‑143 (MQ=255)                                                         cTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTg                                                                                >  1:766913/1‑143 (MQ=255)                                                           tctcAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGAt                                                                              <  1:744883/143‑1 (MQ=255)                                                            ctcAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGGCGCACTCTCAATCGTCAAACGCCCGTCTGGTg                                                                             >  1:56837/1‑143 (MQ=255)                                                                 gtcTACACAACACATCGCGATTTCTTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATTTAATc                                                                        <  2:509122/141‑1 (MQ=255)                                                                   ctccacaacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCaa                                                                      <  2:472908/140‑1 (MQ=255)                                                                                cGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAAc                                                         <  1:216376/143‑1 (MQ=255)                                                                                 gCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTACGCCAGCAACt                                                        >  2:761715/1‑143 (MQ=255)                                                                                 gCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCGTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACt                                                        <  2:390247/143‑1 (MQ=255)                                                                                  cAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATAACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTACTCAACTCCGCCAGCAACTg                                                       >  2:254569/1‑143 (MQ=255)                                                                                  cAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATGCTCTCTGAATACCCTTCGCCCTGCGTCGCACTCACAATCGTCACAAGCACGTCTGATGTAATCAACCCAGCCAGCACCTg                                                       >  2:261107/1‑143 (MQ=38)                                                                                       tATTGTTTTTGCGGCTTATGGATGGCCGGATAAGGCGTGTTCGCCGCGTCCGGCAATCCTCTCTGAGTACCCTTCGCCCTGCGCCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATaaa                                                  <  1:192712/143‑1 (MQ=255)                                                                                            aaTTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACACTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCCGCCACTGTTATATCttg                                             >  1:149561/1‑142 (MQ=39)                                                                                                     aTTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCt                                    >  2:165957/1‑143 (MQ=255)                                                                                                        aTGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAGTCGTCAAACGCACGTCTGATGTACTCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCTGcc                                 >  1:730224/1‑143 (MQ=255)                                                                                                         tGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgcatcaggcaacccagaagaaagccggatgatcatccggctttttta                                <  2:383523‑M2/143‑108 (MQ=255)                                                                                                         tGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCTGCCg                                <  1:165957/143‑1 (MQ=255)                                                                                                         tGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCTGCCg                                <  1:575837/143‑1 (MQ=255)                                                                                                          ggAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgcatcaggcaacccagaagaaagccggatgatcatcc                                          <  1:550030‑M2/132‑98 (MQ=255)                                                                                                          ggAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgcatcaggcaacccagaagaaagccggatgatcatcc                                          >  2:550030‑M2/1‑35 (MQ=255)                                                                                                            aaGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCCGCACCTGCTACCCCTCCATCGTTGCTTCCGGtt                             >  1:442566/1‑143 (MQ=38)                                                                                                              ggCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTACGCCAAAAACTGATAAACCTTCATCGATTCTGCCGGTTCg                           >  1:405174/1‑143 (MQ=255)                                                                                                                 cGGATAAGGCGTTTTCGCCGCATCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgcatcaggcaacccagaagaaagccggatgatcatccggcttttttacatcatca                        <  1:118093‑M2/143‑116 (MQ=255)                                                                                                                 cGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCCACTGATCAACCTACATCGTTTCTGCCggcacgccc                        >  2:231762/1‑136 (MQ=255)                                                                                                                   gATTAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCTGCCGGTTCGGCATc                      <  2:633450/143‑1 (MQ=255)                                                                                                                         gCGTTTTCGCCGCATCCGTCAATTCTCTCGGATTACCCTTCGCCCTTCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCTGCCGGTTCGGCATCGCCGCt                <  2:715920/143‑1 (MQ=255)                                                                                                                         gCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCACGAACTGACAAACCTTCATCGTTTCTGCCGATCCGGCACcgccgcc                >  2:298415/1‑142 (MQ=255)                                                                                                                            ttttCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTACTCTACTCCGCCAGCAACTCTTCTACCTTCATCGCTTCTCCCGATTTGACATCACCGCTATc             >  1:3038/1‑143 (MQ=255)                                                                                                                              ttCGCCTCATTCGTCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCTGCCGGTTCGGCATCGCCGCTATCGc           <  1:224863/143‑1 (MQ=255)                                                                                                                                 gccgcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGCAATCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCTGCCGGTTCGGCATCGCCGCTATCGCTGa        <  2:690013/143‑1 (MQ=255)                                                                                                                                  ccgcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCCTCCAACGCACGTCTGATCTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCTTCCGGTTAGGAATTGCCGATAACGcaaat       >  1:523944/1‑139 (MQ=255)                                                                                                                                     cATCCGGCAATTCTCGCTGATTACCCTGCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCTGCCGGTTCGGCATCGCCGCTATCGCTGAtata    <  2:197231/143‑1 (MQ=255)                                                                                                                                      tgccGGCAATTCTCTCTGATTACCCTTCGCCCTGCTTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCGGCAACTGATAAACCTTCATCGTTTCTGCCGGTTCGCCATCGCCGCTATCGCTGATATAc   <  2:763446/141‑1 (MQ=255)                                                                                                                                       tCCGGCATTTCTCTCTGCTTCCCCTTCGCCGTGCGTCGCACTCTCTATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCTGCCGGTTCGGCATCGCCGCTATCGCTGATATAcc  <  2:104785/143‑1 (MQ=255)                                                                                                                                       tCCGGCAATTCTCTCTGATTACCCTTAGCCCGGCGTCGCACTCTCAATCGTCAAACGCACCTCTGATGTAATCAACTCAGCCAGCAACTGACAAACCGTCATCGTCTCTACCGGCTCGGCAGCCCCCCTATCGCGGATACAcc  >  2:348631/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                          ATGTAAAAAAGCCGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGTTTCTGCCGGTTCGGCATCGCCGCTATCGCTGATATACC  >  NC_000913/4253891‑4254167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.